HsaEX0073946 @ hg19
Exon Skipping
Gene
ENSG00000196357 | ZNF565
Description
zinc finger protein 565 [Source:HGNC Symbol;Acc:26726]
Coordinates
chr19:36692879-36705566:-
Coord C1 exon
chr19:36705524-36705566
Coord A exon
chr19:36701511-36701689
Coord C2 exon
chr19:36692879-36692952
Length
179 bp
Sequences
Splice sites
3' ss Seq
AGAAAATGATTTTTTTTCAGCCA
3' ss Score
3.58
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTTAGCTCCGCAAGGACCCGGACGCGACCAGGGGAGGCAGAAG
Seq A exon
CCAGGTGTGGTGGCGAGTACCTGTAGTCCCAGCTACTCGGGAGGTTGAGGCGGGAGGATTGCTTGAGCCCGGGAGGCGGAGGTTGCAGCGAGCCAAGATTACACCACTGCATTCCAGCCTGGGTGATGAAACAAGAGCCTGTCTCAGGAAAAAAAAAAAAATGATTTTTTGAAACCAAG
Seq C2 exon
GACTCTGCACTTGTCCAAGAGAAGAATCCAGAGAAATCAGAGCAGGTCAAATAGTTCTAAAAGCCATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196357-'1-2,'1-1,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCAGGGGAGGCAGAA
R:
TGGGCCATGGCTTTTAGAACT
Band lengths:
92-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)