BtaEX6081941 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002398 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]
Coordinates
chr18:47095252-47115925:-
Coord C1 exon
chr18:47115852-47115925
Coord A exon
chr18:47095596-47095722
Coord C2 exon
chr18:47095252-47095338
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACAGTTCCAAACCATTATAGGGA
3' ss Score
5.22
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAACCACCCCTTTTCTAAAGAAGAGCCCAAAGGAAGACTGGTCATCTCTTGTAAATCTCAAAACCATGGCTCAG
Seq A exon
GGATCAGTGTCATTCAAAGATGTGACTGTGGACTTCAGTCAGGAGGAGTGGCAGCACCTGGATCCTGCTCAGAAGACACTCTACATGGATGTAATGTTGGAAAACTATTGCCATCTCATTTCTGTAG
Seq C2 exon
GGTGTCACATGACCAAGCCTGATGTGATCCTCAAATTGGAACGAGGAGAAGAACCATGGACATCATTTAAAGGTCATACCTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002398-'2-10,'2-9,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACCCCTTTTCTAAAGAAGA
R:
GGTATGACCTTTAAATGATGTCCATG
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]