HsaEX0073952 @ hg38
Exon Skipping
Gene
ENSG00000189042 | ZNF567
Description
zinc finger protein 567 [Source:HGNC Symbol;Acc:HGNC:28696]
Coordinates
chr19:36694802-36712867:+
Coord C1 exon
chr19:36694802-36694876
Coord A exon
chr19:36712386-36712512
Coord C2 exon
chr19:36712781-36712867
Length
127 bp
Sequences
Splice sites
3' ss Seq
TACAGTTCCATCCATTCTAGGGA
3' ss Score
7.75
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GAACTGCCTCTTTTCTAAAGAGGACTCCAAAGGAAGGACTGGTCATCTCTTTCATATCTCAAAACCATGGCTCAG
Seq A exon
GGATCAGTGTCTTTCAATGATGTGACTGTGGACTTCACTCAGGAGGAGTGGCAGCACCTGGATCATGCTCAGAAGACTCTATATATGGATGTGATGTTGGAAAACTATTGCCACCTCATCTCTGTGG
Seq C2 exon
GGTGTCACATGACCAAACCTGATGTGATCCTCAAGTTGGAACGAGGAGAAGAGCCATGGACATCATTTGCAGGTCATACCTGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189042-'9-18,'9-15,14-18=AN
Average complexity
A_C1
Mappability confidence:
92%=88=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTCTAAAGAGGACTCCAAAGGA
R:
GGTATGACCTGCAAATGATGTCCA
Band lengths:
147-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development