BtaEX6082495 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046805 | CYP2F1
Description
cytochrome P450, family 2, subfamily F, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr18:50348689-50349740:-
Coord C1 exon
chr18:50349681-50349740
Coord A exon
chr18:50349214-50349390
Coord C2 exon
chr18:50348689-50348830
Length
177 bp
Sequences
Splice sites
3' ss Seq
CAACTCTGCTCCATCCTTAGATG
3' ss Score
7.83
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTATCCATTATCCACCTCATCAATGAAAACTTCCAAATCATGAGCAGCCCCTGGGGAGAG
Seq A exon
ATGTACAATATCTTTCCGAACCTCCTGGACTGGGTGCCCGGGCCACACCGACGCCTTTTTAAGAACTACGGACGCATAAAGGACATCATCGCCCGCAGCGTCCGTGAACACCAGGCTTCCCTTGACCCAAACTCTCCCCGAGACTTCATTGATTGCTTCCTTACCAAGATGGCACAG
Seq C2 exon
GAAAAGCAGGACCCGCTGAGCCACTTCTTCATGGATACTCTGCTGATGACCACACACAATCTGCTCTTCGGCGGCACTGAGACCGTGGGTACCACGCTGCGCCACGCCTTCCGACTGCTCATGAAGTATCCAGAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046805-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.1=100)
A:
PF0006717=p450=FE(15.5=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCCATTATCCACCTCATCAATGA
R:
CTTGCACTTCTGGATACTTCATGA
Band lengths:
202-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]