GgaEX0017169 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NT96]
Coordinates
chr8:25581698-25582932:-
Coord C1 exon
chr8:25582772-25582932
Coord A exon
chr8:25582074-25582250
Coord C2 exon
chr8:25581698-25581830
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTTTCTGTCCAAAGCTG
3' ss Score
8.13
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAAATCCTTTCAACCCTCACCTTAAAATCAACAATGCTGTTTCAAACATCATCTGCTCCGTCACCTTTGGCAACCGGTTTGAATACCATGATGAGAACTTCCAAACCTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCATGAGAAAATAATGAGCCAG
Seq A exon
CTGTACAATGCTTTCCCCTCCATAGTGAAGTACCTCCCTGGATCCCACCAAACCATATTTAAAAACTGGAGGCTCATGAAAGATTTTGTGAACGAGAAGATCAGCAAACATAAGGAAGATCTGAACCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAG
Seq C2 exon
CCCAGTGGCAGTGAATTCCATGAGGAAAACCTGGTGGCATGTGCTCTTGACCTACTGTTTGCTGGGACTGAGACCACTTCCACAACCATCCGCTGGGCCCTGCTGTTTATGGCCGTATATCCGGAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394-'6-9,'6-6,7-9
Average complexity
S
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
PF0006717=p450=FE(14.6=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTTCAAACATCATCTGCTCC
R:
ATACGGCCATAAACAGCAGGG
Band lengths:
244-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]