GgaINT0036004 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NT96]
Coordinates
chr8:25582074-25582932:-
Coord C1 exon
chr8:25582772-25582932
Coord A exon
chr8:25582251-25582771
Coord C2 exon
chr8:25582074-25582250
Length
521 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTCATTTTTTCTGTCCAAAGCTG
3' ss Score
8.13
Exon sequences
Seq C1 exon
GAAATCCTTTCAACCCTCACCTTAAAATCAACAATGCTGTTTCAAACATCATCTGCTCCGTCACCTTTGGCAACCGGTTTGAATACCATGATGAGAACTTCCAAACCTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCATGAGAAAATAATGAGCCAG
Seq A exon
GTACAGCCCTCCTCCTGATGAACAAACCAAGCAACCTCATCTGATCCTCATACACCTTTATGTGTAGACACTTCAGCACTGACACAGCACTCCTTTGAACACTCATTGATAGTTTATGTCCTTTTTATACTGTAGACCCCAAAATCTCTCTAGGAGAGGTTTGGGGAAGGAGCAACACTGAAAAAATCAAGGATGTTTTTGCCATTCCCCATATAGAGTACATCAGTCAGTAATTTCTTTCAGCCATATTTTCAAGCTGAGCAATGCTCACATTGCTCTCTTTGCCCCCACATCACTGCTCCTAACCACTGATTGCCAAGCTCCCTGTTGTGACTGAGAAATGCACTAGTCCCTCTATTGTGAAATGGAGATACCAATCCTATGTCATGCTCCTTTAGAGACAGATAATTGCATGTACTCCAGCACTGTAGGACAGTGGCTTTGCAGGTTTTTCAAGTTTTGAAAACAGGAGGGGTTTTCAGTCCTTTACTCAATTTGCTCTTCATTTTTTCTGTCCAAAG
Seq C2 exon
CTGTACAATGCTTTCCCCTCCATAGTGAAGTACCTCCCTGGATCCCACCAAACCATATTTAAAAACTGGAGGCTCATGAAAGATTTTGTGAACGAGAAGATCAGCAAACATAAGGAAGATCTGAACCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394:ENSGALT00000017746:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATCCTTTCAACCCTCACCT
R:
TTGGCCATCTCCTGCAGGTAG
Band lengths:
337-858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]