GgaEX0017169 @ galGal3
Exon Skipping
Gene
ENSGALG00000011394 | F1NT96_CHICK
Description
NA
Coordinates
chr8:27459136-27460370:-
Coord C1 exon
chr8:27460210-27460370
Coord A exon
chr8:27459512-27459688
Coord C2 exon
chr8:27459136-27459268
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTTTCTGTCCAAAGCTG
3' ss Score
8.13
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAAATCCTTTCAACCCTCACCTTAAAATCAACAATGCTGTTTCAAACATCATCTGCTCCGTCACCTTTGGCAACCGGTTTGAATACCATGATGAGAACTTCCAAACCTTGCTGCGGCTGATGGATGAGACTGTTACCCTCCATGAGAAAATAATGAGCCAG
Seq A exon
CTGTACAATGCTTTCCCCTCCATAGTGAAGTACCTCCCTGGATCCCACCAAACCATATTTAAAAACTGGAGGCTCATGAAAGATTTTGTGAACGAGAAGATCAGCAAACATAAGGAAGATCTGAACCCCTCAGAGAGCCGGGACTTCATCGACAGCTACCTGCAGGAGATGGCCAAG
Seq C2 exon
CCCAGTGGCAGTGAATTCCATGAGGAAAACCTGGTGGCATGTGCTCTTGACCTACTGTTTGCTGGGACTGAGACCACTTCCACAACCATCCGCTGGGCCCTGCTGTTTATGGCCGTATATCCGGAAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
88%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(13.4=100)
C2:
PF0006717=p450=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTTCAAACATCATCTGCTCC
R:
ATACGGCCATAAACAGCAGGG
Band lengths:
244-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]