RnoEX0025925 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115076424-115092109:-
Coord C1 exon
chr5:115091949-115092109
Coord A exon
chr5:115086871-115087047
Coord C2 exon
chr5:115076424-115076562
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTTTCTTTATAAGCTC
3' ss Score
6.83
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GACAGCCTTTTGACCCTCACTTCAAGATCAACAGTGCGGTTTCCAATATCATTTGCTCCATTACCTTTGGGGAGCGCTTTGAGTATGAGGACAGTCTATTTCAGGAGCTGCTGAGATTATTGGATGAGGCCTCATGTTTGGAGTCATCAATGATGTGCCAG
Seq A exon
CTCTACAATGTCTTTCCAACCATAATTAAATATCTTCCTGGATCACATCAAACAGTTTTGAGAAACTGGGAAAAACTGAAATTGTTTATTTCCTGTATGATGGACAGTCACCAGAAAGACTGGAACCCTGACGAACCAAGAGATTTCATTGATGCTTTCCTTACAGAAATGGCAAAG
Seq C2 exon
GGCACCACAATTCTGACCAATTTGACTGGTCTTCACAGGGACCCCAAAGAGTGGGCCACCCCGGACACCTTCAACCCAGAGCACTTTTTGGAAAATGGACAGTTTAAGAAGAGAGACTCTTTCCTGCCTTTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-9/18=8-12
Average complexity
C3
Mappability confidence:
82%=90=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.193
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(8.5=100),PF0006717=p450=PU(1.9=2.9)
Main Skipping Isoform:
ENSRNOT00000012503fB3819
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCTTTTGACCCTCACT
R:
GTGCTCTGGGTTGAAGGTGTC
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]