RnoEX6022389 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115076424-115184219:-
Coord C1 exon
chr5:115184010-115184219
Coord A exon
chr5:115167829-115167837
Coord C2 exon
chr5:115076424-115076562
Length
9 bp
Sequences
Splice sites
3' ss Seq
AACTGCATTCGGGGATCTAGCCC
3' ss Score
0.51
5' ss Seq
AAGAAAGGG
5' ss Score
-7.61
Exon sequences
Seq C1 exon
ATGCTCGCCACCGCGGGCTCTCTGGTAGCCACGATCTGGGCAGCGCTCCATCTCAGGACTCTGCTGGTGGCTGCACTCACCTTCCTACTCCTGGCTGACTACTTCAAAACCCGGCGCCCCAAGAACTATCCCCCGGGGCCTTGGGGTCTCCCATTCGTGGGCAACATATTCCAGTTGGACTTTGGGCAGCCCCACCTCTCAATCCAGCCG
Seq A exon
CCCAGTAAG
Seq C2 exon
GGCACCACAATTCTGACCAATTTGACTGGTCTTCACAGGGACCCCAAAGAGTGGGCCACCCCGGACACCTTCAACCCAGAGCACTTTTTGGAAAATGGACAGTTTAAGAAGAGAGACTCTTTCCTGCCTTTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224-'17-30,'17-21,20-30=AN
Average complexity
A_C3
Mappability confidence:
94%=67=92%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.193
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=37.1)
A:
PF0006717=p450=FE(0.4=100)
C2:
PF0006717=p450=FE(8.5=100),PF0006717=p450=PU(1.9=2.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGTTGGACTTTGGGCAG
R:
ACTCTTTGGGGTCCCTGTGAA
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]