RnoEX0025923 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115076424-115217824:-
Coord C1 exon
chr5:115217662-115217824
Coord A exon
chr5:115092607-115092756
Coord C2 exon
chr5:115076424-115076562
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCTGAATCTCTCCTTTCCAGGAT
3' ss Score
8.26
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
TTTGTGAAGAAATATGGGAATGTTTTAAGCCTGGATTTTGCTAACATTCCTTCAGTGGTTGTAACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTTTGAATCGCCCTGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATG
Seq A exon
GATTGATCATGTCCAATGGCCAGACATGGAAAGAGCAAAGAAGGTTCACAATGACGACACTCAAGAACTTTGGATTAGGGAAAAGGAGCTTAGAGCAACGCATACAGGAGGAGGCCAACTATCTTGTGGAGGCTATTGGAGCGGACAAAG
Seq C2 exon
GGCACCACAATTCTGACCAATTTGACTGGTCTTCACAGGGACCCCAAAGAGTGGGCCACCCCGGACACCTTCAACCCAGAGCACTTTTTGGAAAATGGACAGTTTAAGAAGAGAGACTCTTTCCTGCCTTTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-7/18=1-12
Average complexity
C3
Mappability confidence:
82%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.193
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
PF0006717=p450=FE(11.0=100)
C2:
PF0006717=p450=FE(8.5=100),PF0006717=p450=PU(1.9=2.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTTGTAACTGGCATGCC
R:
TGAGAAAGGCAGGAAAGAGTCT
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]