RnoINT0044391 @ rn6
Intron Retention
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115208282-115210638:-
Coord C1 exon
chr5:115210462-115210638
Coord A exon
chr5:115208424-115210461
Coord C2 exon
chr5:115208282-115208423
Length
2038 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
AACACACATTGCCTTTCCAGTAC
3' ss Score
6.43
Exon sequences
Seq C1 exon
CTCTACAATATCTTTCCAAGGATACTTCAGTATCTTCCTGGATCACACCAAACACTTTTCAGCAACTGGAGAAAACTGAAGTTGTTTATTTCTGATATTATTAAGAATCACCGGAGAGACTGGGATCCAGATGAGCCAAGGGACTTCATTGATGCTTTCCTCAAGGAAATGGCAAAG
Seq A exon
GTGGGGAAGATGCTGCAGTATTGTCTTCTGTGTGTGGAAGAAGCATCAGTTTAATGATTTCTGATTGATCCTACAATGTGTTTCCTTATTGGTTTGACATGGCACAGATGTGTTCCCTCACAGCACTGTATCATCCTTGCATGCCTGTTCTTCAGGCAAGCTTTGTGTGGAAATAGTGAGAACTCAATTCTGATTCTACAGGACACAGATCCTTTTTGCTATGTCTTCTTCTTTAATCTTCAATGCCAGGACAACAGCATCTATTTCTCCCTGATCACTACTTCCACATTTATATCTCATCTCTTTGATTATGAACCTGGAGCTACCTCTTATAAGAATATTTCAGGATAATCTCTGTTTTTGAAAATTACTCACACATACAAGCTTTATTATGGAGTATTATTTAATATGCACAGGAATAAATAGATGGACATCTGAGGATAATTACTTGGCACACTACAGGAAAATTAAATGGAAAGGATATAGTACTTAAGAGGTATACAATTGCATTTATTTAGGATTATTGGGGACATTAAAAATAAAGGTCTAAGCCATTTGGTGGGAGACCATGACAATGCTAGACACTATCTTTATGCGTTTCTCTTAGCTTTTATCCATATGTGAATGAGCTGCATAATAAACAAAAGTAGCAATTAAGCTTCAGAGGCCAGTTTTGTTACAAGTTGGTCTAGGGTCAGTTACTGACTGCATCTTACCCACCCATCTCTGCAAGATAAAACAAAATATACCTGAATGCTGAAGTTTAACTTTAAGATTTAGATGAAGCCCTCTAACTCCCATAAAAACATCCAGTGATACACAAGACCCTAGACAGCAGCCAGTTTGTTAGGGTTGTTACTTTTGCACCATTATGACAATACTTGACAAAAAGAGCACAAAATAGATTTATTTTGGCTCACAGTGTCAGTAAGTCGGATCCATCACTACAAAGAAGAAATGACAGAGAAGTTAAGCTCAAGGTAGCAAAATGCCTATGGTGAAGTCTAGTCACATAATGACACATTAAGAAGCAGAGACCAAGGCAAGATCTAAGGCCTCGATATAACTTTAAGAGCCATGCCCTTAGTGATTGGATGCATCCAGATATTGCCTACCCCCAATATTACAGAACCTCCAAAAAATACTTCAGACTACTAGGAATCAAGAATTCAAAACATGAGCCAGTAGTAATTGTGCAATTTCATTGCAGATCCAAACCATATCACAAAATATACAGCCTTGATCTCACCAGGTATCCTAATGGTGCACATTACTGGATCAGTGGTGTAAGCTAGGATAAATTGGGTCCCTCCTCTGACCAGAGGCCAAATAGTAAATTTTTCATCCTCTTGGTTTTTTTTTACTTGTCTTTGATAATATTAATAAAAGCAGTGTTGTACTTTTGTCTTCAGAGGAAGAGATAACTAATTACTTGTCCCATACAAGTATTAAACTATCAATATTAAGAGCAATTGTAACAAATTTATACTTCTAGAGTAAGCTGATGAAGATGATGTTATGTCATAAAAATAATTGATATAAACAGAAAAGTCTTAACTAGAAAAGATTACCAGTGAAATCAGAAAAGCAGTGAACAAAGAGAGCTGATTGGATTCTTTCTGGCATCAACAAAATCATTTGTTGAGCCTTGACTATGTACCTGTGGTATCTCACAATATTGATAATGGCATGTTAATGTGTGTTTTATACTCTCATTTTATCAACATGACACAAAGCAGTGTTGAGTGAATACCCTAGACAATATATTTACTTAGTGATATGGCTGATACTAGAAGACAAATATGATTTTTATCCCATCTTCTTATCACTGGACAAAGGTTTTCCAAATGTTTAACCAGAAGAAGATAGTTATAATGATTTTCATCAACCCAAGTGCCATACTGCTTTGGACAGCTTGCAGAACTTGGGAAAGGAAAATTCTTCATGAGAAGACCAAAAGGAATATCACTTTTCAAAACTCTATCCCAAGGTCTTGACTCAAAACCTCTGAATAAACAAACACACATTGCCTTTCCAG
Seq C2 exon
TACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGTACTTTGGATCTTTTCTTTGCTGGTACAGAGACAACATCCACTACACTGCGCTGGGCTCTGCTCTGCATGGCCCTGTACCCAGAAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224:ENSRNOT00000012503:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]