RnoEX0025922 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115092607-115216045:-
Coord C1 exon
chr5:115215896-115216045
Coord A exon
chr5:115215320-115215480
Coord C2 exon
chr5:115092607-115092756
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTCCCACCTCCAGGAC
3' ss Score
12.3
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACTCTGAGGAACTTTGGACTAGGAAAGAAGAGCTTAGAGCAGCGAATACAAGAGGAAGCCTACCACCTTGTGGAGGCCATAAAAGATGAGGGAG
Seq A exon
GACTGCCTTTTGACCCTCACTTCAATATCAACAAAGCAGTCTCTAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGAGTACCATGACAGTCAGTTTCAGGAGATGCTGAGGCTACTGGATGAGGCCATGTGTTTGGAGTCATCAATGATGTGCCAG
Seq C2 exon
GATTGATCATGTCCAATGGCCAGACATGGAAAGAGCAAAGAAGGTTCACAATGACGACACTCAAGAACTTTGGATTAGGGAAAAGGAGCTTAGAGCAACGCATACAGGAGGAGGCCAACTATCTTGTGGAGGCTATTGGAGCGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-3/18=2-7
Average complexity
C3
Mappability confidence:
82%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.7=100)
C2:
PF0006717=p450=FE(11.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGTTTGCCCTGATGACT
R:
GCCTCCACAAGATAGTTGGCC
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]