GgaEX1018546 @ galGal4
Exon Skipping
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25614237-25616922:-
Coord C1 exon
chr8:25616782-25616922
Coord A exon
chr8:25615097-25615257
Coord C2 exon
chr8:25614237-25614413
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTTGTCCCCCTCAGGGC
3' ss Score
11.31
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTCTCATATCCTCAAATGGTCACATATGGAGGCAACAGAGAAAGTTTGTTTCAGCAACGCTGAAAAGCATTGCGGTCAGTTTTGAGTCAAAAGTGCAAGAGGAGAGCCGGTACCTCGTGGAGGCGATGGAGGAAGAGAAGG
Seq A exon
GGCAACCGTTTGACCCTCATTACAAAATTAATAGCGCTGTTTCGAACATTATCTGTTCTATAACTTTTGGGAACCGCTTCAACTACCATGACAGCAACTTCCAGGAATTACTGCACTTGCTTGCAGAAACACTGCTGCTGATAGGAAGTTTCTGGGGCCAG
Seq C2 exon
CTGTATAATGCTTTCCCTCTGATAATGAGATGGCTACCAGGGCCCTTCAGGAAGATATTCAGGCACTGGGAGAAACTGCAGCGTTTTGTGAGGGGAGTGATTGCAAAACACAAGGAGGACTTGGACCAGTCTGACTTGGGAGATTACATTGACTGTTACTTAAAGGAAATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.7=100)
A:
PF0006717=p450=FE(12.1=100)
C2:
PF0006717=p450=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCACATATGGAGGCAACA
R:
CAGACTGGTCCAAGTCCTCCT
Band lengths:
258-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]