MmuEX1007910 @ mm10
Exon Skipping
Gene
ENSMUSG00000015224 | Cyp2j9
Description
cytochrome P450, family 2, subfamily j, polypeptide 9 [Source:MGI Symbol;Acc:MGI:1921769]
Coordinates
chr4:96573852-96630849:-
Coord C1 exon
chr4:96630711-96630849
Coord A exon
chr4:96583409-96583569
Coord C2 exon
chr4:96573852-96574039
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTCCCAACTCCAGGAC
3' ss Score
10.43
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GGAACCATGATCCTGACCAATTTGACTGCACTACACAGAGACCCCAAAGAGTGGGCCACTCCAGAAGTGTTCAATCCAGAGCATTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCCTTTCTGCCATTCTCAATGG
Seq A exon
GACAGCCTTTTGACCCTCACTTCAATATCAGCAATGCAGTTTCCAACATAATTTGCTCTATTACCTTTGGGGAGCGCTTTGACTACCATGACAGTCAGTTTCAGGAGATGCTGAGGCTACTGGATGAGGCCATGTGTTTGGAGTCATCAATGATGTGCCAA
Seq C2 exon
AAAAAATGCAGGCTGAGATTGACAGAGTGATTGGCCAAGCAAGACAGCCGAATCTGGCAGACCGAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCAGAGGATGGGCAACATCATCCCCTTTAACGTTCCCAGGGAAGTGGCAGTTGACACCCAGTTGGCTGGATTTAACTTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015224_MULTIEX1-2/7=C1-5
Average complexity
C3
Mappability confidence:
83%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(13.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTACACAGAGACCCCAA
R:
CCCTGGGAACGTTAAAGGGGA
Band lengths:
257-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types