RnoEX0025916 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115076424-115084420:-
Coord C1 exon
chr5:115084329-115084420
Coord A exon
chr5:115077277-115077464
Coord C2 exon
chr5:115076424-115076562
Length
188 bp
Sequences
Splice sites
3' ss Seq
AAGCCCCTGTTTTCTTGCAGAAA
3' ss Score
8.66
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
CACCCTGGACCTCTTCTTTGCTGGATCAGAGACAACATCTAACATACTGCGCTGGTCTCTGCTCTACATAACTACAAACCCAGAAGTACAAG
Seq A exon
AAAAAGTACACTCTGAGATCGACAGAGTAATTGGCCATAGGAGACAGCCAAGCACAGGTGACCGAGATGCCATGCCCTACACCAATGCTGTCATCCATGAGGTTCTGAGGATGGGCAACATCATCCCCTTGAATGTTCCCAGGGAAATGACAGCTGATAGCACACTGGCTGGATTCCACCTGCCTAAG
Seq C2 exon
GGCACCACAATTCTGACCAATTTGACTGGTCTTCACAGGGACCCCAAAGAGTGGGCCACCCCGGACACCTTCAACCCAGAGCACTTTTTGGAAAATGGACAGTTTAAGAAGAGAGACTCTTTCCTGCCTTTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224_MULTIEX1-11/18=10-12
Average complexity
C1
Mappability confidence:
87%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.349 C2=0.193
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(13.6=100)
C2:
PF0006717=p450=FE(8.5=100),PF0006717=p450=PU(1.9=2.9)
Main Skipping Isoform:
ENSRNOT00000012503fB3819
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGACCTCTTCTTTGCT
R:
TGAGAAAGGCAGGAAAGAGTCT
Band lengths:
226-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]