GgaEX0017170 @ galGal3
Exon Skipping
Gene
ENSGALG00000011394 | F1NT96_CHICK
Description
NA
Coordinates
chr8:27457879-27459268:-
Coord C1 exon
chr8:27459136-27459268
Coord A exon
chr8:27458489-27458676
Coord C2 exon
chr8:27457879-27458017
Length
188 bp
Sequences
Splice sites
3' ss Seq
TAACTGCTTTTTCCAAACAGCCC
3' ss Score
8.71
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CCCAGTGGCAGTGAATTCCATGAGGAAAACCTGGTGGCATGTGCTCTTGACCTACTGTTTGCTGGGACTGAGACCACTTCCACAACCATCCGCTGGGCCCTGCTGTTTATGGCCGTATATCCGGAAATTCAAG
Seq A exon
CCCATGTACAAGCGGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCAGCCCTAGAGGACAGGAACAACATGCCCTACACCAATGCCGTCATACATGAAGTGCAGAGGAAAGGCAACATCATCCCTTTCAATGTGCCGAGACAGGCGGTGAAGGACACAGTCTTGGCTGGTTTCCGGGTGCCCAAG
Seq C2 exon
GGTACTATTTTGATCCCAAATCTGTCCTCTGTGATGTATGACAAGAAGGAGTGGGAAACCCCTCACAGTTTTAATCCTGGGCATTTCCTGAAGGACGGTCAGTTCTGGAAAAGGGAGGCTTTTATGCCGTTTTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
83%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
PF0006717=p450=FE(13.6=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGGCAGTGAATTCCAT
R:
TCCAGAACTGACCGTCCTTCA
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]