HsaEX0018290 @ hg38
Exon Skipping
Gene
ENSG00000134716 | CYP2J2
Description
cytochrome P450 family 2 subfamily J member 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr1:59900965-59907927:-
Coord C1 exon
chr1:59907786-59907927
Coord A exon
chr1:59904871-59905058
Coord C2 exon
chr1:59900965-59901103
Length
188 bp
Sequences
Splice sites
3' ss Seq
AACCCTTCCCTCTTTACCAGAAA
3' ss Score
8.65
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CACACAGGCAATCCTACTTCAAGTTTCCATGAAGAAAACCTCATCTGCAGCACCCTGGACCTCTTCTTTGCCGGAACCGAGACAACTTCCACAACTCTGCGATGGGCTCTGCTTTATATGGCCCTCTACCCAGAAATCCAAG
Seq A exon
AAAAAGTACAAGCTGAGATTGACAGAGTGATTGGCCAGGGGCAGCAGCCGAGCACAGCCGCCCGGGAGTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCAGAGAATGGGCAACATCATCCCCCTGAACGTTCCCAGGGAAGTGACAGTTGATACCACTTTGGCTGGGTACCACCTGCCCAAG
Seq C2 exon
GGTACCATGATCCTGACCAATTTGACGGCGCTGCACAGGGACCCCACAGAGTGGGCCACCCCTGACACATTCAATCCGGACCATTTTCTGGAGAATGGACAGTTTAAGAAAAGGGAAGCCTTTATGCCTTTCTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134716_MULTIEX1-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.323 C2=0.170
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(13.6=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAATCCTACTTCAAGTTTCCA
R:
GGCTTCCCTTTTCTTAAACTGTCC
Band lengths:
257-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development