MmuEX0013354 @ mm9
Exon Skipping
Gene
ENSMUSG00000052914 | Cyp2j6
Description
cytochrome P450, family 2, subfamily j, polypeptide 6 [Source:MGI Symbol;Acc:MGI:1270148]
Coordinates
chr4:96190394-96196214:-
Coord C1 exon
chr4:96196076-96196214
Coord A exon
chr4:96192530-96192717
Coord C2 exon
chr4:96190394-96190532
Length
188 bp
Sequences
Splice sites
3' ss Seq
ACCCTTCTGTTTACTTTTAGAAA
3' ss Score
10.46
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TACCCAGAGAAGACTACAAGTTTCAATGAAGAAAACCTTATCTGCAGCACTTTGGACCTCTTCTTTGCTGGAACAGAGACAACATCAACTACATTACGCTGGGCTCTGCTCTACATGGCCCTCTACCCAGAAGTCCAAG
Seq A exon
AAAAAGTACAGGCAGAGATTGATAGGGTGATTGGCCAGAAGAGGGCAGCAAGACTTGCTGATAGAGAATCCATGCCCTATACCAATGCTGTCATCCACGAGGTGCAGAGGATGGGCAATATCATCCCCTTGAATGTTCCCAGGGAAGTAGCAATGGATACCAATTTGAATGGATTTCATCTGCCAAAG
Seq C2 exon
GGTACAATGGTTCTAACAAACCTAACTGCACTGCACAGAGACCCAAAAGAGTGGGCCACTCCAGATGTGTTCAATCCAGAGCACTTTTTGGAGAATGGACAGTTTAAGAAGAGAGAATCCTTTCTGCCCTTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052914_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.1=100)
A:
PF0006717=p450=FE(13.7=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTATCTGCAGCACTTTGGA
R:
CCATTGAGAAGGGCAGAAAGGA
Band lengths:
244-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: