GgaEX0017185 @ galGal4
Exon Skipping
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25611945-25613875:-
Coord C1 exon
chr8:25613734-25613875
Coord A exon
chr8:25613011-25613198
Coord C2 exon
chr8:25611945-25612083
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGGATTTCTGGTTTCTGTAGAGA
3' ss Score
6.56
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
TGTAAGGGTGACACCAACTCCTATTTCCATGAGGAAAATCTGCTCTGCTCCACACTGGACCTCTTCTTGACTGGGACAGAGACAACAGCAACCGCCATCCGCTGGGCTCTGCTCTACATGGCCGCGTACCCCCACATTCAGG
Seq A exon
AGAAAGTGCAGCTTGAAATTGATGCTGTGATTGGCCAGTGCCGCCAGCCCACCATGGAGGACAAGGAGCACATGCCCTACACCAGCGCAGTGCTGAGCGAGGTGCTGCGAATGGGCAACATTGTGCCGTTGGGAGTGCCCAGGATGTCCACCAATGACACAACCCTGGCTGGCTTCCACGTGCCCAAG
Seq C2 exon
GGTACCACGCTGATGACCAGCCTGACTTCAATAATGTTTGACAAAAATGTGTGGGAGACTCCAGACACCTTTAATCCTGAACACTTCCTGGAGAACGGCCAGTACAGGAGGCGGGAGGCTTTCCTGCCCTTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.7=100)
A:
PF0006717=p450=FE(14.2=100)
C2:
PF0006717=p450=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGCTCTGCTCCACACTG
R:
GCAGAGAAGGGCAGGAAAGC
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]