RnoEX0025914 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115203037-115208423:-
Coord C1 exon
chr5:115208282-115208423
Coord A exon
chr5:115204858-115204958
Coord C2 exon
chr5:115203037-115203063
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTGTTTTGTCCTAGAAA
3' ss Score
9.5
5' ss Seq
GAGGTGCAG
5' ss Score
2.03
Exon sequences
Seq C1 exon
TACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGTACTTTGGATCTTTTCTTTGCTGGTACAGAGACAACATCCACTACACTGCGCTGGGCTCTGCTCTGCATGGCCCTGTACCCAGAAGTCCAAG
Seq A exon
AAAAAATGCAGGCTGAGATTGACAGAGTGATTGGCCAAGGAAGACAGCCAAACCTGGCAGACCGAGACTCCATGCCCTACACCAACGCCGTCATTCACGAG
Seq C2 exon
GGTACTATGACAACCAACTTAACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224-'6-10,'6-9,7-10
Average complexity
S*
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.171
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
PF0006717=p450=FE(13.7=100)
C2:
PF0006717=p450=FE(1.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGACAAGACTACTACAAGT
R:
TGCAGTTAAGTTGGTTGTCATAGT
Band lengths:
168-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]