BtaEX6017465 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86413152-86426939:+
Coord C1 exon
chr3:86413152-86413293
Coord A exon
chr3:86420515-86420702
Coord C2 exon
chr3:86426801-86426939
Length
188 bp
Sequences
Splice sites
3' ss Seq
AATCTTCTGTACTTTTCCAGAGA
3' ss Score
7.91
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CATAAGGGTAATGCTGCTTCAAGTTTCCATGAAGAAAACCTTATCTACAATACCCTGGACCTCTTCTTTGCTGGAACAGAGACAACTTCAACCACCTTGCGCTGGGGTCTGCTCTACATGGCCCTGTACCCTGAAATCCAAG
Seq A exon
AGAAAGTCCAAGCTGAAATCGATAAGGTGCTTGGTGAGTCACAACAACCAAGCACGGCCGCTCGCGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCCTCCCTCTGAACGTGCCCCGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGCCCAAG
Seq C2 exon
GGTACCATGGTGCTGACCAACCTGACTGCACTGCACAGGGACCCCGCAGAGTGGGCCACCCCTGACACATTCAATCCGGAGCATTTTCTAGAGAATGGACAGTTTAAGAAAAGGGAAGCCTTTCTGCCTTTTTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085-'7-11,'7-9,8-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.294 C2=0.174
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.3=100)
A:
PF0006717=p450=FE(17.5=100)
C2:
PF0006717=p450=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTTCAAGTTTCCATGA
R:
GGCTTCCCTTTTCTTAAACTGTCC
Band lengths:
251-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]