MmuEX6094432 @ mm10
Exon Skipping
Gene
ENSMUSG00000015224 | Cyp2j9
Description
cytochrome P450, family 2, subfamily j, polypeptide 9 [Source:MGI Symbol;Acc:MGI:1921769]
Coordinates
chr4:96571935-96577733:-
Coord C1 exon
chr4:96577592-96577733
Coord A exon
chr4:96573852-96574039
Coord C2 exon
chr4:96571935-96572073
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTATTTTGTTTGGTTTTCAGAAA
3' ss Score
9.41
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TACCCAGACAAGACTACTACAAGTTTCAATGAAGAAAACCTCATCTGCAGCACTCTGGACCTCTTCTTTGCTGGAACAGAGACAACATCTACAACACTGCGCTGGGCTCTCCTCTGCATGGCCCTCTACCCAGAAGTCCAAG
Seq A exon
AAAAAATGCAGGCTGAGATTGACAGAGTGATTGGCCAAGCAAGACAGCCGAATCTGGCAGACCGAGACTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCAGAGGATGGGCAACATCATCCCCTTTAACGTTCCCAGGGAAGTGGCAGTTGACACCCAGTTGGCTGGATTTAACTTGCCAAAG
Seq C2 exon
GGTATTATGGTTCTTTCCAACCTAACTGCACTGCACAGGGATCCTAGCGAGTGGACCACCCCAGATACATTCAATCCAGAGCACTTTCTGGAGAATGGACAATTTAAGAAGAGAGAATCCTTTCTGCCATTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015224_MULTIEX1-5/7=4-6
Average complexity
S
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.213
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(13.6=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTCATCTGCAGCACTCTG
R:
TGAGAATGGCAGAAAGGATTCTCT
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types