GgaEX0017185 @ galGal3
Exon Skipping
Gene
ENSGALG00000011413 | E1BVV4_CHICK
Description
NA
Coordinates
chr8:27486933-27488500:-
Coord C1 exon
chr8:27488400-27488500
Coord A exon
chr8:27487999-27488186
Coord C2 exon
chr8:27486933-27487071
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGGATTTCTGGTTTCTGTAGAGA
3' ss Score
6.56
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GATCCACTCTTTCCCAGACATCATTTAAGGGTTGGCAGTGGAAGTGAGAATATCTTGTCTGAGATCTCTGCCTATTTGAGGGCTGTGTGAGCCTTCCTGAG
Seq A exon
AGAAAGTGCAGCTTGAAATTGATGCTGTGATTGGCCAGTGCCGCCAGCCCACCATGGAGGACAAGGAGCACATGCCCTACACCAGCGCAGTGCTGAGCGAGGTGCTGCGAATGGGCAACATTGTGCCGTTGGGAGTGCCCAGGATGTCCACCAATGACACAACCCTGGCTGGCTTCCACGTGCCCAAG
Seq C2 exon
GGTACCACGCTGATGACCAGCCTGACTTCAATAATGTTTGACAAAAATGTGTGGGAGACTCCAGACACCTTTAATCCTGAACACTTCCTGGAGAACGGCCAGTACAGGAGGCGGGAGGCTTTCCTGCCCTTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413-'7-7,'7-6,8-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(13.4=100)
C2:
PF0006717=p450=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTCTTTCCCAGACATCA
R:
GCAGAGAAGGGCAGGAAAGC
Band lengths:
236-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]