BtaEX6017461 @ bosTau6
Exon Skipping
Description
Bos taurus cytochrome P450, family 2, subfamily J (LOC521656), mRNA. [Source:RefSeq mRNA;Acc:NM_001038551]
Coordinates
chr3:86507391-86514497:+
Coord C1 exon
chr3:86507391-86507532
Coord A exon
chr3:86507884-86508071
Coord C2 exon
chr3:86514359-86514497
Length
188 bp
Sequences
Splice sites
3' ss Seq
AGCCTCCTCTTATTTCCCAGAAA
3' ss Score
7.92
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CACAAAGGCAATGCTACTTCGAGTTTCGATGACGAAAACCTCATCTGCAGCACCCTGGACCTCTTCTTGGCTGGAACAGAGACAACTTCAACCACCCTGCGCTGGGGATTGCTTTTCATGGCCCTGAACCCCGAAATCCAAG
Seq A exon
AAAAAGTCCAAGCTGAGATCGACAGGGTGCTCGGGCAATCACAGAAGGTGAGCACGGCCTCTCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCGTCCCCATGAACGTGCCCAGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGGTCAAG
Seq C2 exon
GGCACCATGGTGCTGACCAACCTGACTGCACTGCACAGGGACCCCGCAGAGTGGGCCACCCCTGACACGTTCAATCCAGAGCATTTTCTGGAAAATGGACAGTTTAAGAAAAGGGAATCCTTTCTGCCTTTCTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000258-'8-11,'8-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.085
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=FE(13.6=100)
C2:
PF0006717=p450=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCTCATCTGCAGCACCC
R:
TGAGAAAGGCAGAAAGGATTCCC
Band lengths:
243-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]