GgaEX0017170 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NT96]
Coordinates
chr8:25580441-25581830:-
Coord C1 exon
chr8:25581698-25581830
Coord A exon
chr8:25581051-25581238
Coord C2 exon
chr8:25580441-25580579
Length
188 bp
Sequences
Splice sites
3' ss Seq
TAACTGCTTTTTCCAAACAGCCC
3' ss Score
8.71
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CCCAGTGGCAGTGAATTCCATGAGGAAAACCTGGTGGCATGTGCTCTTGACCTACTGTTTGCTGGGACTGAGACCACTTCCACAACCATCCGCTGGGCCCTGCTGTTTATGGCCGTATATCCGGAAATTCAAG
Seq A exon
CCCATGTACAAGCGGAGATCGATGCTGTCATTGGGCAGGCCCGGCAGCCAGCCCTAGAGGACAGGAACAACATGCCCTACACCAATGCCGTCATACATGAAGTGCAGAGGAAAGGCAACATCATCCCTTTCAATGTGCCGAGACAGGCGGTGAAGGACACAGTCTTGGCTGGTTTCCGGGTGCCCAAG
Seq C2 exon
GGTACTATTTTGATCCCAAATCTGTCCTCTGTGATGTATGACAAGAAGGAGTGGGAAACCCCTCACAGTTTTAATCCTGGGCATTTCCTGAAGGACGGTCAGTTCTGGAAAAGGGAGGCTTTTATGCCGTTTTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011394_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.022
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
PF0006717=p450=FE(15.6=100)
C2:
PF0006717=p450=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGGCAGTGAATTCCAT
R:
TCCAGAACTGACCGTCCTTCA
Band lengths:
242-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]