HsaEX0018291 @ hg38
Exon Skipping
Gene
ENSG00000134716 | CYP2J2
Description
cytochrome P450 family 2 subfamily J member 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr1:59900965-59905058:-
Coord C1 exon
chr1:59904871-59905058
Coord A exon
chr1:59904366-59904516
Coord C2 exon
chr1:59900965-59901103
Length
151 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTTTGTTTTGGTAGAAC
3' ss Score
6.92
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
AAAAAGTACAAGCTGAGATTGACAGAGTGATTGGCCAGGGGCAGCAGCCGAGCACAGCCGCCCGGGAGTCCATGCCCTACACCAATGCTGTCATCCATGAGGTGCAGAGAATGGGCAACATCATCCCCCTGAACGTTCCCAGGGAAGTGACAGTTGATACCACTTTGGCTGGGTACCACCTGCCCAAG
Seq A exon
AACATCTCACCAGACTAGGGATCTGCCAAACTTTGGGAAATTCTGCTTCATGAACCTGGGGTTCTAGAATGCTAAAATGTGAAAGGACATTTAAGACCACCTGGGACAACATCATATTAATGCTGGTGTTTTTAACATAATATCCCCACAG
Seq C2 exon
GGTACCATGATCCTGACCAATTTGACGGCGCTGCACAGGGACCCCACAGAGTGGGCCACCCCTGACACATTCAATCCGGACCATTTTCTGGAGAATGGACAGTTTAAGAAAAGGGAAGCCTTTATGCCTTTCTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134716_MULTIEX1-2/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACAGAGTGATTGGCCAGG
R:
CCGGATTGAATGTGTCAGGGG
Band lengths:
249-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development