MmuEX6094427 @ mm9
Exon Skipping
Gene
ENSMUSG00000052914 | Cyp2j6
Description
cytochrome P450, family 2, subfamily j, polypeptide 6 [Source:MGI Symbol;Acc:MGI:1270148]
Coordinates
chr4:96202137-96212552:-
Coord C1 exon
chr4:96212390-96212552
Coord A exon
chr4:96202687-96202836
Coord C2 exon
chr4:96202137-96202297
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCTGAATCTCTTCCTTTCAGGAT
3' ss Score
8.77
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTGGTGAAGAAATATGGGAATATTTTTAGCCTGAATCTTGGTGACATAACTTCAGTGGTCATAACTGGACTGCCCTTAATCAAAGAAGCACTTACTCAAATGGAACAAAACATTATGAATCGTCCTCTAAGTGTTATGCAAGAACGTATATCTAATAAAAATG
Seq A exon
GATTGATCTTCTCCAGTGGCCAAATATGGAAGGAGCAAAGAAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTGGGAAAGAAGAGCTTAGAGGAGCGCATGCAGGAGGAGGCCTCCCACCTAGTGGAAGCCATAAGAGAGGAGGAAG
Seq C2 exon
GAAAACCTTTCAACCCTCACTTCAGTATCAACAATGCAGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGACTACCATGACAGTAGATTTCAGGAGATGCTGAGGTTACTGGACGAGGTTATGTATTTGGAGACAACAATGATTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052914-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
PF0006717=p450=FE(11.0=100)
C2:
PF0006717=p450=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGTCATAACTGGACTGC
R:
ACCTCGTCCAGTAACCTCAGC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: