DreEX6045094 @ danRer10
Exon Skipping
Gene
ENSDARG00000094057 | cyp2j20
Description
cytochrome P450, family 2, subfamily J, polypeptide 20 [Source:ZFIN;Acc:ZDB-GENE-041210-324]
Coordinates
chr20:25711926-25712801:+
Coord C1 exon
chr20:25711926-25712088
Coord A exon
chr20:25712404-25712553
Coord C2 exon
chr20:25712641-25712801
Length
150 bp
Sequences
Splice sites
3' ss Seq
AGTGTCCGTTTTGTAAACAGGTT
3' ss Score
9.01
5' ss Seq
AGGGTATTT
5' ss Score
4.53
Exon sequences
Seq C1 exon
TTTGCAGAAAAATATGGCAAGATTTTCAGCCTTAGACTTTTTGGACCAAGAATTGTTGTGTTAAATGGATATAACTTAGTGAAGGAAGTGTATACTCAAGAGGGTGACAACCTCGCTGATCGAGCCATTTTACCCTTATTTCACGACATTATTGGAGACAAAG
Seq A exon
GTTTAGTGGCTTCCAGTGGATATAAATGGAAGCAGCAGAGGAGATTTGCACTCTCGACTCTTCGAAACTTCGGATTGGGAAAGAAAAACTTGGAGCCATCCATCAATCTCGAAAGTGGCTTTCTGAATGAGGCCATTTCAAATGAACAGG
Seq C2 exon
GTCAACCCTTTGACCCTCGCTTACTTCTGAACAACGCTGTATCAAATGTGATCTGTGCACTTGTGTTTGGTAATCGCTTTGACTACAGTGACCATAAATTTCAGACTCTGCTGAAGAACATCAACGAGACTGTGCATCTGGAAGGAGGCATCTGCGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094057-'3-2,'3-1,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(11.0=100)
C2:
PF0006717=p450=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAGATTTTCAGCCTTAGACT
R:
TGGTCACTGTAGTCAAAGCGA
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]