MmuEX1012580 @ mm10
Exon Skipping
Gene
ENSMUSG00000098867 | Gm27463
Description
predicted gene, 27463 [Source:MGI Symbol;Acc:MGI:5530845]
Coordinates
chr15:82639265-82642001:-
Coord C1 exon
chr15:82641785-82642001
Coord A exon
chr15:82640348-82640500
Coord C2 exon
chr15:82639265-82639441
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACACACATATGCACTTTCAGGTG
3' ss Score
7.99
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GTGAAGCCTGGGAAGCAGTGGGGCAGCCATGGAGCTGCTGACTGGGACTGGCCTGTGGCCTGTGGCCATATTCACAGTCATCTTCATATTACTGGTGGACCTGATGCACCGGCGCCAGCGCTGGACTTCTCGCTACCCACCGGGCCCTGTGCCATGGCCTGTGCTGGGTAACCTGCTGCAGGTGGACCTGGATAACATGCCATACAGCTTGTACAAG
Seq A exon
GTGTGGTCTTTGCACCTTACGGGCCTGAATGGCGAGAACTGAGGAGATTCTCTGTGTCAACCCTGCGCAACTTGGGCCTGGGCAAGAAATCGCTGGAGCAGTGGGTGACAGAGGAAGCTGGCCACCTCTGTGATGCCTTCACCGCCCAGGCTG
Seq C2 exon
GTTCTGAACACATTTCCAATTCTCCTGCACATCCCAGGGTTGGCTGACAAAGTCTTCCCTGGGCAAAAGACATTTCTCACCCTGGTAAATAAGCTGGTGACTGAGCACAAGAGGACCTGGGACCCTGACCAGCCACCTCGTGACCTGACTGATGCCTTTCTGGCTGAAATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000098867_MULTIEX2-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTTCTCGCTACCCACC
R:
AAAGGCATCAGTCAGGTCACG
Band lengths:
256-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types