HsaEX0018277 @ hg19
Exon Skipping
Gene
ENSG00000205702 | CYP2D7P1
Description
cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 1 [Source:HGNC Symbol;Acc:2624]
Coordinates
chr22:42538481-42539585:-
Coord C1 exon
chr22:42539411-42539585
Coord A exon
chr22:42538729-42538881
Coord C2 exon
chr22:42538481-42538640
Length
153 bp
Sequences
Splice sites
3' ss Seq
CGTGTCCGTCCCGCCCCCAGGGG
3' ss Score
11.48
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
Exon sequences
Seq C1 exon
CAGTTGCGGCGCCGCTTCGGGGACGTGTTCAGCCTGCAGCTGGCCTGGACGCCGGTGGTCGTGCTCAATGGGCTGGCGGCCGTGCGCGAGGCGATGGTGACCCGCGGCGAGGACACGGCCGACCGCCCGCCTGCGCCCATCTACCAGGTCCTGGGCTTCGGGCCGCGTTCCCAAG
Seq A exon
GGGTGTTCCTGTCGCGCTATGGGCCCGCGTGGCGCGAGCAGAGGCGCTTCTCCGTGTCCACCTTGCGCAACTTGGGCCTGGGCAAGAAGTCGCTGGAGCAGTGGGTGACCGAGGAGGCCGCCTGCCTTTGTGCCGCCTTCGCCGACCAAGCCG
Seq C2 exon
GACGCCCCTTTCGCCCCAACGGTCTCTTGGACAAAGCCGTGAGCAACGTGATCGCCTCCCTCACCTGCGGGCGCCGCTTCGAGTACGACGACCCTCGCTTCCTCAGGCTGCTGGACCTAGCTCAGGAGGGACTGAAGGAGGAGTCGGGCTTCCTGCGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205702_MULTIEX1-2/6=1-3
Average complexity
S
Mappability confidence:
92%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGCTCAATGGGCTGG
R:
CTCCTTCAGTCCCTCCTGAGC
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)