BtaEX6017466 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86404308-86407932:+
Coord C1 exon
chr3:86404308-86404470
Coord A exon
chr3:86407235-86407384
Coord C2 exon
chr3:86407772-86407932
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTTGGCTTTCTTTTTCCCAGGCT
3' ss Score
7.81
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTTGTGAAGAAATACGGGAACCTTTTTAGCCTGGAATTCGGTGACTTGCCTTCAGTTGTTATAACTGGATTGCCCTTAATCAAAGAAGTCCTTGTCTACCAGGACCAAAACTTTGTGAACCGCCCCATAAGCCCTATTCGAGAGCGTGTTTTTAAGAAAAATG
Seq A exon
GCTTGATCATGTCCAATGGCCACATATGGAAAGAGCAAAGAAGGTTCTCCCTGACAGCTCTGAGGAACTTTGGTTTAGGAAGGAAGAGCTTAGAGGAACGCATACAGGAAGAAGTTGCCTACCTCATCCAGGCAATAGGAGAGGAGAAAG
Seq C2 exon
GACAGCCTTTCAACCCTCACTTCAAAATCAACAATGCTGTTTCCAATATTATTTGCTCCATCACCTTCGGGGAGCGGTTTGACTACCAGGATGATCAGTTCCAGGAGCTGCTGAGGCTGCTGGATGAGGTCACCTACTTAGAGACAACAGTGTGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(15.3=100)
A:
PF0006717=p450=FE(14.1=100)
C2:
PF0006717=p450=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAATTCGGTGACTTGCCT
R:
AGCAGCTCCTGGAACTGATCA
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]