RnoEX0025926 @ rn6
Exon Skipping
Gene
ENSRNOG00000031004 | Cyp2j4
Description
cytochrome P450, family 2, subfamily j, polypeptide 4 [Source:RGD Symbol;Acc:620007]
Coordinates
chr5:119561574-119564846:-
Coord C1 exon
chr5:119564681-119564846
Coord A exon
chr5:119562136-119562285
Coord C2 exon
chr5:119561574-119561734
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCTGAATCTCTTCATTTGAGGAT
3' ss Score
4.04
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CAGTTTGTGAAGAAATATGGGAATATTTTTAGCCTGAATCTTGGTGACATAACATCCGTGGTCATAACTGGACTGCCCTTAATCAAAGAAACCTTTACTCACATAGAACAAAACATTTTGAATCGCCCTCTCAGTGTTATGCAAGAACGCATCACCAATAAAAATG
Seq A exon
GATTGATCTTCTCCAGTGGTCAGACATGGAAGGAGCAAAGAAGGTTTGCCCTGATGACACTCAGGAATTTTGGCTTGGGAAAGAAGAGCTTAGAGCAGCGCATGCAGGAGGAGGCCCACTACCTCGTGGAAGCCATAAGAGAGGAGAAAG
Seq C2 exon
GAAAACCTTTCAACCCTCACTTCAGTATCAACAATGCAGTTTCCAATATCATTTGCTCTGTCACCTTTGGGGAGCGCTTTGAGTACCATGACAGTAGATTTCAGGAGATGCTGAGGTTGCTGGATGAGGTCATGTATTTGGAGACAACAATGATAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031004-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(12.9=98.2)
A:
PF0006717=p450=FE(11.7=100)
C2:
PF0006717=p450=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTCATAACTGGACTGCC
R:
TGACCTCATCCAGCAACCTCA
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]