MmuEX7002402 @ mm10
Exon Skipping
Gene
ENSMUSG00000081225 | Cyp2j12
Description
cytochrome P450, family 2, subfamily j, polypeptide 12 [Source:MGI Symbol;Acc:MGI:3717097]
Coordinates
chr4:96121437-96133157:-
Coord C1 exon
chr4:96132995-96133157
Coord A exon
chr4:96122514-96122663
Coord C2 exon
chr4:96121437-96121597
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCTGAATCTCCATTTTCCAGGAT
3' ss Score
6.45
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TTTGTGAAGAAGTATGGAAACCTAACTAGCCTGGACTTTGGTAATATTCCTTCAGTAATAATAACTGGACTGCCCTTGATCAAAGAAGTCTTCACTAACATGGAACAAAACTTTTTGAATCGTCCTATTACACCTATCAGAAAACGTGTCTTTAATAACAATG
Seq A exon
GATTGATCATTTCCAATGGCCAGACATGGAAGGAGCAAAGAAGGTTCGCACTGATGACACTCAAGAACTTTGGATTAGGGAAAAAGAGCTTGGAGCAGCGCATACAGAAGGAGGCTGACTGTCTTGTGGAGGCCATAGGAGAGGAGAAAG
Seq C2 exon
GACAGCCTTTTGACCCTCACTTCAAGATCAACAGTGCAGTTTCCAACATCATTTGCACCTTTGCCTTTGGGGAGCGCTTTGAGTATGAGGACAGTCACTTTCATGAGTTGCTGAGGTTATTAGATGAAGCCACGTGTTTGGAGGCATCAATGATGTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000081225-'1-4,'1-3,2-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
PF0006717=p450=FE(11.0=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACTGCCCTTGATCAAA
R:
CCTCCAAACACGTGGCTTCAT
Band lengths:
244-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types