RnoEX0025911 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115215896-115222084:-
Coord C1 exon
chr5:115221866-115222084
Coord A exon
chr5:115217662-115217769
Coord C2 exon
chr5:115215896-115216045
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTAACATTCCTTCAGTGG
3' ss Score
6.52
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATATCAGCCATGCTTGTCACAGCGGGTTCCCTACTAGGGGCCATTTGGACCGTGCTCCATCTCCGGATTTTGCTGCTGGCTGCTGTCACCTTTCTGTTCCTGGCTGATTTCCTCAAACACCGGCGCCCCAAGAACTACCCGCCAGGGCCTTGGCGCCTGCCCTTAGTGGGTTGCTTGTTCCATTTGGATCCTAAACAGCCACACCTATCCCTTCAGCAG
Seq A exon
TGGTTGTAACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTTTGAATCGCCCTGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATG
Seq C2 exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACTCTGAGGAACTTTGGACTAGGAAAGAAGAGCTTAGAGCAGCGAATACAAGAGGAAGCCTACCACCTTGTGGAGGCCATAAAAGATGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224-'0-2,'0-1,1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=37.1)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGCGGGTTCCCTACTAG
R:
TTTGCTCCTTCCATGTCTGGC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]