MmuEX0013355 @ mm10
Exon Skipping
Gene
ENSMUSG00000015224 | Cyp2j9
Description
cytochrome P450, family 2, subfamily j, polypeptide 9 [Source:MGI Symbol;Acc:MGI:1921769]
Coordinates
chr4:96583977-96591578:-
Coord C1 exon
chr4:96591136-96591578
Coord A exon
chr4:96585829-96585991
Coord C2 exon
chr4:96583977-96584126
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACTACTGTAATATTTTTCAGTTT
3' ss Score
7.56
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGAGACAAAGCTCTGTTAAGACTTAGGGAAGCAGATAAACAAGGCGGGCCAAAGTTGCTGAAGTGAATAGAGCAGGGAGGAGGAGTCTGCAGGCGACAGATTGGAGGGGCCCTGTAGCGATTTGGGGGTTTAAACCACAGGCCTGGTTCATTCTGGGAACTACAGGCAGTGTCCTTGGGGAACTGCCTCAGTTCAGATTCTCATTCCTCCAAGAGCCTGCTCTGATATCAGCCATGCTTGCGGCAGCCGGCTCCCTAGTGGCTGCCATTTGGGCTGCGCTCCATCTCCGGATTTTGCTGCTGTCTGCTGTCACCTTTCTGTTCCTGGCTGATTTCCTCAAAAACCGTCGCCCCAAGAACTACCCGCCAGGGCCAATGCGCCTTCCTTTCGTGGGTTGCTTGTTCCATTTGGACCCCAAGCAGCCCCACCTATCCCTTCAGCAG
Seq A exon
TTTGTGAAGAAATACGGGAATGTTCTAAGCCTGGATTTTGCTAACATACCTTCAGTGGTTATAACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTATGAATCGCCCAGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATG
Seq C2 exon
GATTGATCTTCTCCAGTGACCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTAGGAAAGAGGAGCTTAGAGGAACGAATACAAGAGGAGGCTCACTACCTTGTGGAGGCCATAAGAGATGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015224-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(23.0=37.1)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATCAGCCATGCTTGCGG
R:
TGCTCCTTCCATGTCTGGTCA
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types