MmuEX0013355 @ mm9
Exon Skipping
Gene
ENSMUSG00000015224 | Cyp2j9
Description
cytochrome P450, family 2, subfamily j, polypeptide 9 [Source:MGI Symbol;Acc:MGI:1921769]
Coordinates
chr4:96250668-96258269:-
Coord C1 exon
chr4:96257827-96258269
Coord A exon
chr4:96252520-96252682
Coord C2 exon
chr4:96250668-96250817
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACTACTGTAATATTTTTCAGTTT
3' ss Score
7.56
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGAGACAAAGCTCTGTTAAGACTTAGGGAAGCAGATAAACAAGGCGGGCCAAAGTTGCTGAAGTGAATAGAGCAGGGAGGAGGAGTCTGCAGGCGACAGATTGGAGGGGCCCTGTAGCGATTTGGGGGTTTAAACCACAGGCCTGGTTCATTCTGGGAACTACAGGCAGTGTCCTTGGGGAACTGCCTCAGTTCAGATTCTCATTCCTCCAAGAGCCTGCTCTGATATCAGCCATGCTTGCGGCAGCCGGCTCCCTAGTGGCTGCCATTTGGGCTGCGCTCCATCTCCGGATTTTGCTGCTGTCTGCTGTCACCTTTCTGTTCCTGGCTGATTTCCTCAAAAACCGTCGCCCCAAGAACTACCCGCCAGGGCCAATGCGCCTTCCTTTCGTGGGTTGCTTGTTCCATTTGGACCCCAAGCAGCCCCACCTATCCCTTCAGCAG
Seq A exon
TTTGTGAAGAAATACGGGAATGTTCTAAGCCTGGATTTTGCTAACATACCTTCAGTGGTTATAACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTATGAATCGCCCAGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATG
Seq C2 exon
GATTGATCTTCTCCAGTGACCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTAGGAAAGAGGAGCTTAGAGGAACGAATACAAGAGGAGGCTCACTACCTTGTGGAGGCCATAAGAGATGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015224_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=37.1)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATCAGCCATGCTTGCGG
R:
TGCTCCTTCCATGTCTGGTCA
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: