DreEX0025428 @ danRer10
Exon Skipping
Gene
ENSDARG00000094057 | cyp2j20
Description
cytochrome P450, family 2, subfamily J, polypeptide 20 [Source:ZFIN;Acc:ZDB-GENE-041210-324]
Coordinates
chr20:25698437-25712553:+
Coord C1 exon
chr20:25698437-25698635
Coord A exon
chr20:25711926-25712088
Coord C2 exon
chr20:25712404-25712553
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTAAAATCACATTTTTCAGTTT
3' ss Score
5.62
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCAGTCATGGACATGTTGCACTTTTACGAGTGGATCGACATCAAAAGTATTCTGATATTTGTGTGTGTCTTTTTGTTACTAAGTGACTTTATTAAAAATAAAACGCCGAAAAACTTTCCTCCTGGACCCTGGTCTTTACCGATTATAGGAGATATTCATCATATCGATCCAAGCAAGCTTCATCTTCAGTTATCAGAG
Seq A exon
TTTGCAGAAAAATATGGCAAGATTTTCAGCCTTAGACTTTTTGGACCAAGAATTGTTGTGTTAAATGGATATAACTTAGTGAAGGAAGTGTATACTCAAGAGGGTGACAACCTCGCTGATCGAGCCATTTTACCCTTATTTCACGACATTATTGGAGACAAAG
Seq C2 exon
GTTTAGTGGCTTCCAGTGGATATAAATGGAAGCAGCAGAGGAGATTTGCACTCTCGACTCTTCGAAACTTCGGATTGGGAAAGAAAAACTTGGAGCCATCCATCAATCTCGAAAGTGGCTTTCTGAATGAGGCCATTTCAAATGAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094057_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=38.8)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCATGGACATGTTGCACT
R:
GTGCAAATCTCCTCTGCTGCT
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]