RnoEX6022390 @ rn6
Exon Skipping
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115092607-115167837:-
Coord C1 exon
chr5:115167829-115167837
Coord A exon
chr5:115095069-115095231
Coord C2 exon
chr5:115092607-115092756
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACAATTGAAATGTGTTTCAGTTT
3' ss Score
6.12
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCCAGTAAG
Seq A exon
TTTGTGAAGAAGTATGGAAACCTAACTAGCCTGGACTTTGGAACTATCCCTTCAGTGGTCATAACTGGACTGCCCTTAATCAAAGAAGCCTTCACTAACACGGAACAAAACTTCCTGAATCGCCCTGTTACACCTCTCAGAAAACGTGTCTTTAATAACAATG
Seq C2 exon
GATTGATCATGTCCAATGGCCAGACATGGAAAGAGCAAAGAAGGTTCACAATGACGACACTCAAGAACTTTGGATTAGGGAAAAGGAGCTTAGAGCAACGCATACAGGAGGAGGCCAACTATCTTGTGGAGGCTATTGGAGCGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224-'20-24,'20-23,22-24=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(0.4=100)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]