BtaEX6017467 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86392280-86407384:+
Coord C1 exon
chr3:86392280-86392489
Coord A exon
chr3:86404308-86404470
Coord C2 exon
chr3:86407235-86407384
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTACTATTTTTTAGTTT
3' ss Score
8.41
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ATGTTGGAGGCGTTGGGCTCCCTGGCGGCTGCCCTCTGGGCCGCGCTCCGTCCTGGCACTGTCCTGCTGGGGGCCATCGTCTTTCTCCTCTTGACTGATCTCCTCAACAGGCGGCGTCCAAAGAACTATCCGCCGGGGCCCCCGCGCCTGCCCTTCGTAGGCAACTTCTTCCAACTGGACTTTGAGCAGGGACACCTGTCGCTTCAGCGG
Seq A exon
TTTGTGAAGAAATACGGGAACCTTTTTAGCCTGGAATTCGGTGACTTGCCTTCAGTTGTTATAACTGGATTGCCCTTAATCAAAGAAGTCCTTGTCTACCAGGACCAAAACTTTGTGAACCGCCCCATAAGCCCTATTCGAGAGCGTGTTTTTAAGAAAAATG
Seq C2 exon
GCTTGATCATGTCCAATGGCCACATATGGAAAGAGCAAAGAAGGTTCTCCCTGACAGCTCTGAGGAACTTTGGTTTAGGAAGGAAGAGCTTAGAGGAACGCATACAGGAAGAAGTTGCCTACCTCATCCAGGCAATAGGAGAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(13.8=37.1)
A:
PF0006717=p450=FE(15.3=100)
C2:
PF0006717=p450=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAAGAACTATCCGCCGG
R:
TCTCCTCTCCTATTGCCTGGA
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]