BtaEX0001185 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86392280-86508071:+
Coord C1 exon
chr3:86392280-86392489
Coord A exon
chr3:86413152-86413293
Coord C2 exon
chr3:86507884-86508071
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATAATCACTGTGCTTTCTAGCAT
3' ss Score
6.07
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTTGGAGGCGTTGGGCTCCCTGGCGGCTGCCCTCTGGGCCGCGCTCCGTCCTGGCACTGTCCTGCTGGGGGCCATCGTCTTTCTCCTCTTGACTGATCTCCTCAACAGGCGGCGTCCAAAGAACTATCCGCCGGGGCCCCCGCGCCTGCCCTTCGTAGGCAACTTCTTCCAACTGGACTTTGAGCAGGGACACCTGTCGCTTCAGCGG
Seq A exon
CATAAGGGTAATGCTGCTTCAAGTTTCCATGAAGAAAACCTTATCTACAATACCCTGGACCTCTTCTTTGCTGGAACAGAGACAACTTCAACCACCTTGCGCTGGGGTCTGCTCTACATGGCCCTGTACCCTGAAATCCAAG
Seq C2 exon
AAAAAGTCCAAGCTGAGATCGACAGGGTGCTCGGGCAATCACAGAAGGTGAGCACGGCCTCTCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCGTCCCCATGAACGTGCCCAGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085_MULTIEX1-6/18=C1-17
Average complexity
ME(6-12[100=100])
Mappability confidence:
81%=100=87%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(13.8=37.1)
A:
PF0006717=p450=FE(13.3=100)
C2:
NA
Main Skipping Isoform:
ENSBTAT00000051914fB205
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGATCTCCTCAACAGGCG
R:
CACGTTCATGGGGACGATGTT
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development