BtaINT0000071 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 2, subfamily J (LOC521656), mRNA. [Source:RefSeq mRNA;Acc:NM_001038551]
Coordinates
chr3:86499924-86502814:+
Coord C1 exon
chr3:86499924-86500086
Coord A exon
chr3:86500087-86502664
Coord C2 exon
chr3:86502665-86502814
Length
2578 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CATTGTATTCATTTTCCCAGGCT
3' ss Score
6.77
Exon sequences
Seq C1 exon
GTTGTGAAGAAATATGGGAACATTATTAGGCTAGATTTTGGTGTAATTCATTTCATCGTTATAACTGGATTGCCCTATATCAAAGAAGCCCTTGTCAACCAGGAACAAAACTTTGTAAACCGCCCCATGATACCTCTTCAGAAACATATCTTTAACAATAAAG
Seq A exon
GTAAGTTCCAAGACCAAAATAAGAAGCATATATTTGATATTCCTGTGGCCTCTGAAATTGCTTCCAACACTCCCAGGACCAGGCCCCTCATGGAATCTCTGCCCCTCAAGGAAATGGAGTGGCCCCATTTCCTGTTGAAGTCACCTCCTCAGGGAACCTGGCCAGGTCAGCTCTAATGTCAGGGATTTGGGAGAAGTGGCATCACCTGCATGAACTCACTCTGGGTGTTTTGATAAATAAGTATCCTCATCACTCAGTGATGTGATGTGTTTTTTTAAGAAGAAGAAAGGCAATGCTGTGTTCTCAGGCTCTCTTCTATTTTCTCATTCAAATCTTCAAATCTTGTCCCCTAGGAAAATATGTAGATCAGTTTCCTCGTACTGACTTTGTGATCCCTTCTTGCCTCTAATTCCTTGTGCTCTGTTATTAAAGCTGTGCCTCACAAAGTATCTCGAGCTTTCTGTCAATGGAAGAGTTTGGCATGAATACTTAAAAAGATCATAAAATAAACTTGGTAAATTAACTTAGATTTTCACAAATCTGAATGAAAAGCTAAAGTCAATTCTTATACCAAAGCACTCTTTTTTTTTACCCCCAGGGGTTTCTCGATTCCTCTTTGAAATATTGCATCTATTAACTCTATGTCCATTTATTCTATGTCTGTAATGTGAACCTAGTGGCTGGCTCTAGTGATAAAATGGTGAGTAGAACAGACAAAATCCTTGGTTTTCTATAACTTACAAGTGACTAAGAAAGACGATATCAATTACACAAATCATTTAAGGCTATGAAGTGTTACGAAGAGCAGGGTTCATCTATTATGGGTATCTAATCTAGTCCTGAGACTCAGGAGAAGCTAATGAAGTTAAAGACAATTGATAAAGTGAAGAAGCAATCCAGAAATCCAGTGACGAAGCAATCCGGAATAGAATATGAAAAGTCTCTGAAGTGGGAAGGACAGTAAACTGAGGAATTGAAAGAGGGCCAGTGTAGTACACACAGGGATTAAATGGAGATAATTAAGTGGAGATAAAGCTGGGGAGTTTGGCCAGAAACAGTTCATCCAAATTCTTGTTAAGGATGTTGTTTTTTATCCTAATAACAATGGAGGCTCCTGAATGGTTTCAGTAGAGAAAGGAATCACCATATTTACATTGTACATTTTAGAGACTTATCTAAGCTGCAATAAAAGGAGCAAGAGACTATGGAGTCTTGGAGGTTAGAGGAGGTGGTGGCCTGGATGAGGGAGGTGGCAAGAAATGATAGCATAGTGAGTTAGACCAGGAAAGTGACTGTGAAGATACATGGATTTAAGCTACTCAGGAGGCAAATCCAATAGGACATGATGACCTAGACAGAGGGACAGTGAGGTGCTGAGGTAGACACCCAAATGGGTAGGTAAAGGAAAGAAGGGTCATGTGAAGGAGGACAGATGTTGACTGGCCTGAGTAGGGAGTTGTATGGAGCAAACCATGAATTCAGTCATTGATATGCTGAGTGTGAAGCCAGGAGAGACAAGCAGCAGGGAATTGTGTAAGCACCTGAAGCTGAGAGACAATAGCACATGTTAACTATCAGTAGATGTCATTTGAAATTTTGGAGTGGAGATTTCCTAGAAATGGAGGATGGGGTAAGAAGAGAAGAGGCTTTGGACCTAATCTTGAAGAGCTCCATCATTTCAAAATTAGATCAAAGAAGATAGTTAACCAAAGGTATGATAATTTCTCTGAAGTCAGCGAATTAGCAGAAAAATCTGGAGAGTGTGATGTTCTGGGCTCCATTGGCAGAGAGTGTTTCAAGAAGAAAGCATCTCATGCTGCTGAGACATCAAGATGAAGCTGAAAAGGACCCTGGATTGAACAGTAAGAAGAGCCATTTCACTAAGGTGATGGAAGCCAAAGGGAGATATTAGAAGGAGTTGAAGTGTAAGATGAAAGGAAGAAATAAGAGGACGGTGGCCTCACCAGTGTTATAAAATAAATGCCTTTATACGATGGCATATTAAGACATATTCTTTTTTCCTTTTTCTGTGGTATTCTTTCTGCACAGTGTTCACATTTCTTTGTGTTCTTGGGTGATTTATTTATCTTTTTAAGGTCTTTTGTCCTTATGAGTATTGATTTTGTATAATCCATAAATTCATACTTAATATGTAGCATAGCAAATTCTTAAATATGGTTATGTGACAAGTAATCAAAGTGTGGGTTTTGGAGTCAGGCAGACTTGAATTTGAATGCATGTTCAGGTGTATACTGACTCTATGACCTTTTACAGTGTGATTTATCCTTTGAGACTCATTTTTCTCATCGTCAAAATTGGGAGGCTTTTTTGGCAGTAATGGTTATACTTACATCAGAGAAATTCCATGAGTACTAAATTACATAATGCATTAAAAATGCTAATGTGCCCAGCATTGCAAGCAATCAGTAAATTCAAGCCATTATATCCGTTGCTTAGAGATTATTTCTCTGAATAATTTTCAAGTGCCTTAAAGTGCTTCTCCTTCCTTCCATCTGATAGGTTATCACCCATGGACCTTGTTGCCTTGCTTTTCATAACATTGTATTCATTTTCCCAG
Seq C2 exon
GCTTGGTCAGGTCCAATGGCCAGGTATGGAAAGAGCAAAGAAGGTTCACCCTGACAACTCTGAGGAACTTCGGTTTGGGAAGGAAGAGCTTAGAGGAACGCATTCAGGAAGAGGTCACCTACCTCATCCAGGCAATAGGAGAGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000258:ENSBTAT00000013230:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]