RnoINT0044388 @ rn6
Intron Retention
Gene
ENSRNOG00000042224 | Cyp2j10
Description
cytochrome P450, family 2, subfamily j, polypeptide 10 [Source:RGD Symbol;Acc:1563215]
Coordinates
chr5:115215896-115217824:-
Coord C1 exon
chr5:115217662-115217824
Coord A exon
chr5:115216046-115217661
Coord C2 exon
chr5:115215896-115216045
Length
1616 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GTGGAATCTCTTCTTTCCAGGAT
3' ss Score
6.88
Exon sequences
Seq C1 exon
TTTGTGAAGAAATATGGGAATGTTTTAAGCCTGGATTTTGCTAACATTCCTTCAGTGGTTGTAACTGGCATGCCCTTAATCAAAGAAATCTTTACTCAAATGGAGCACAATTTTTTGAATCGCCCTGTCACTCTTCTCCGAAAACATCTCTTTAACAAAAATG
Seq A exon
GTAAGTTTCTTGATCAATATGTAGTGTGTTTTTATAATTTTTGTCACATGGTAAAAGTTCCTGTCCATCTGTAAATGAAGCAGGATGCCACATTTCCTGAATGAAAACATCGTTAGGGTGAAACCATGTGTCCTGTACACCGACTCTTGATGCTTTGGTAGTAAGCCCAGTCAGACACACTGTGCTCTCACTTCCCTTTTCCCACTCCCAACCTCTGCTCTAGAAAAACAGATGAATCACCTTCCTACTGATGATACTCTTCTTGTTTATAACTCTTCAAATACAATCATTAAAGTGATGACATTAAGGGGTCTTTAGCCTTCTGGCCAATAATATAACAGGCTGGTTTGAATACGCATTATCATTCCAAAATAATCAGAAGGTCGATATCAGACTATTTTATGGAGATAGGCAAAAGGATTTGAGGATTTCTCTGAAAGTTACAAAACTAATGGAAGCATGGCATTATTGCACATGCCATGATAGTTGGTGAACACTGATTATGCCAGAACGATCTTCCTCCTTGCCTCTAGACTCTCTGTGTTTGGGATACTCCCCCTTCTTACTTTCTTGAGTCATTTATTCACTCTACTGTATGTTTTGGCTAGAACATTGTCCACAAAACTTTCTTACATCATGTGTCTTGTTGTATCCATGAGTGTATTCCTGCTGCTCAACTTAACATATGCAGCAGTGAATTAGTTAACTGCTCTGGATAGCAGCAGGTCACACACACTGCACCTCCATGCCCCTGCAAGATCTCTCTAGATTCACGAGATACTTTTAATAGGTCTTCCTATCTCAATAACTGGCCACTTTAAAATTCCTTGCAGCTTTCACACACTCCCCTCTGGTATCCCTGGCTAAACACCTTCTAAATCTATAATTCATCTTTGCTGCCCTGTTACTTTCTGGGCACCCCCCGCCCCTCCCATAGAGCCACATTCTCTTTCCACCTACATTGTTGGATAATTTCTGTCATGCAGCTCTTAAATCTCATCTCTCTTGCTCCAAGAGCCATGGCAGTTCTCCACTTCTCCCTCTATCCCTCTGTCCATTGCTGCCACAATCAAAAATCCTGCCTCTGTCTCCCTGTCCAGTTATTGGCTGTAAGGCAATTCTTTACTACCAATCAAAGCCATCTGGGGGGCAGAGACCCTCAGGCTGAAGCATGACTTTTGGGAGCTGAATTAAGACAAAGCATTAGAACCAATTCCGAACAAACATGAACTTCTAGACTTGTATGATCAGAGTATGGACTTCAGATCTGGAGAAAACTGAAACGTGAATAAAAGTTGCTCTCTTATAACTATATTTCTTTATAAAGTATGCTTTGTGCCTTTGTCTGAGCTTTTGCATCAGGTAGAATGAATGGGCCTTCATTAATTGTTAATAAGCACATGGATTTTCTGAAAGCACTAAATCCCATTATATGCAAGGAATGCTGTTGTAAGTAACCAGTAAATACCAGTTCCCTTGCTTTGGGATTGTCTCTCTAGATAGCTGCCAAGTGCTTATTGACCTTTCTTCTTTGCACCATACACATGTCCATCCAGTTCATCGGGAAATTTTAAATGAGACTTATAATAACGTAATGTGGAATCTCTTCTTTCCAG
Seq C2 exon
GATTGATCTTCTCCAGTGGCCAGACATGGAAGGAGCAAAGGAGGTTTGCCCTGATGACTCTGAGGAACTTTGGACTAGGAAAGAAGAGCTTAGAGCAGCGAATACAAGAGGAAGCCTACCACCTTGTGGAGGCCATAAAAGATGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042224:ENSRNOT00000012503:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGGGAATGTTTTAAGCCTGGA
R:
CTCCCTCATCTTTTATGGCCTCC
Band lengths:
302-1918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]