BtaINT0007289 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86404311-86407384:+
Coord C1 exon
chr3:86404311-86404470
Coord A exon
chr3:86404471-86407234
Coord C2 exon
chr3:86407235-86407384
Length
2764 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GTTGGCTTTCTTTTTCCCAGGCT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GTGAAGAAATACGGGAACCTTTTTAGCCTGGAATTCGGTGACTTGCCTTCAGTTGTTATAACTGGATTGCCCTTAATCAAAGAAGTCCTTGTCTACCAGGACCAAAACTTTGTGAACCGCCCCATAAGCCCTATTCGAGAGCGTGTTTTTAAGAAAAATG
Seq A exon
GTAAGTTTCTTGACTAATATAAGATGTGTACATTTGATATTCTTATAGTCTGTGAAAGGTACTTTTGTTTCTGTAATTCTCCAACACTCCCAGGGACTAGGCCCCTCATAAGTTCCTGCCCCTTAAGGAAGCTGAGTGCCCTCATTTCTCTGTTGAAGGTACCTCCTCAGGGCCCCTGGCAGGGTCCACCCTAATGTCAGGGATTTGGGAAAAGCGACATCACCTGCATGAACTCACTCTGGATGCTTAGATAAATAAGTATCCTCATCACTCAGTGATGTGATGTGTTTTTTCGCAGAGGAAAGGCAATGAATTCTCAGGCTCTCTTTCTCCACTCAGATCTCTTCCCCTAGGAAAATGGATGTGGATCAGCTTCCTCCTCCTCTTGATTATGTGATCCCTTCTTGCGTCTCGCTTCTTGTGATCTGTTGTTAAGGCTGTGCCTTACAAGATATCTCGAGGCTTCCATTTTTGTTAGAAGGGTTTGGGGTTTCCCTGGTGGCTCAGTGGTAAAGAATCTGCCTGCCAGTGTAGAAGACATGGGTAGATCCCACATACCGCGGAGCAGCTAAGCCTGTGCACCACAAATACAGAAGCTGTGCTCCGCAAAAAGAGAAACCACCACAGTGAGAAGCCAGTGCACTGCAACTAGAGAGCAGCCCCTGCTTGTCCCAACTAGACAAAAGCCCACAGCAGTGAAGACCCAGCAGAGCCATAAATAAGTAAAATCATTGAAATGGAAAAAGAGGGGTTTAGCATAAATACTTAAAATGATTATTAAATTTACACGTTTAAAAATCTAAATGAAAAACTCAATATTCTACGAAAGCACCATATTATTAGGTGCTTCTCAATTTCTCTTTGAAATATTTTACCCACTAACTCTACATGCATTCACTGTGTTTATTTGCCATATGAAGCCTGGTGGTCAGCACCAGTAACAGAACAGCGAGGAGAATGACAAAGTCCTTATTTTTCTGTAACTTACATTTCATTCAGAAAAACAGTATCAGTTACTCTAACAATTTAAGACCTTAGTGTTATGAAGATAAGAGCATAATGTACTTCCTAAGAGTGTCTAATATCCTGAGACTTAGGTAAAGCTAACACAGTGACAGTTAATATCATAAAGTGAAAAAACTATCAGGTGGAGGGAATGGAGTATGAAAAGTCTCTGAGGTGGGAAGAAGGACACTGAACTGGAGGAACTGAAAGGTGACCAGTGTTGCCGCACAGGGATTAAATGGAGATGAAGCTGCTGAGTTCTAACAGGAATAGTTCATGCAAATTAAGGATGTTGCTTTTTATCCTAAGAACAATGGAAGCTCCTGCATGGTTTCAGTATAGAAAGGGATCATCATACTTACACGGTACATTTTAAAGACTTCTCAAAGCTATAATGTGAAGAATGGAATAAAGGGAGCAAGAGACTATTGCAGCGTTTTAGGTGAGACGAGATGGTGGCCTGGACTAGGGAGGTGGAGAGAAATAGCACTCCAACAGGTTAGACCAGGAGAGCGACTGTGAAGATACATGTATTTAAGTTTCTAAGGAGGAAAATCCGGTAGGACATGATGACCCAGACAGAGGGAGAATGAGGTGTTGAGGTAGACACCCAAATGGGTAGGTAAAGGAAAGAAGGGACATGTGGAAGAGGACAAAGTGTTGGCTGGCCTGGAGAGTTGTATAGAGCAAATAATGAATTCAGTTATAGATATGCTGAGTGTGAAATGCATTTAAATCTGCAGAGTCAAGCAGATACTCGTATATGTGTCTAGTGCTGAGGGCCAGAAATAGATATTAACTATCAGTAGATTTCACTTAAAATTTTAGGAACTAATGAGATTTCCCCCAAAATGGAATATAGATAAAGAGAAAAGACTTCAGGCCTAGTCTTGAAGAGCTCCATCATTTCAAAATTCAATAGAAGATGAATTAACAAAAGATACAGGAATTTCTCTGTGGTCAGAGATTAAAGGAGGGAAATCTAGAGAGTGTGGTGTCCTGGACACCATTGGAAGAGAGTGTTTCAAGAAAGAAACATCTCATGCTGATGACACATGGTGGTGAGGCTGAAAAGGATCCTGGACTGGACAGCAGGGAAGATCATGTCCTTGTCGTGGGGTAAGCCAAAGTCAGGTATAAGAGTGAGTTGAAGAGTACTCTGGAAGTAAATAAATGAAAGGATGGTGACCTCCCCTGTGTTATGAAATAAATGATCATTTATTGAACACACAAAGATGGATTGTTTTCCTCTGCCTGTGTTGTCCACTCTGCATAGATGTTTCACTCTTCCGTGCTTTCTTGAGTGATTCATTTATTTTCAAGGCCTGGTTTAGATAAGATCTCACCTAAAGGACTTACCTTGTGAATATGGATTTTGTCTAATCCACAAGTGCACTCTTAGTATGTTGTATGATACAAATATTTACATATACTTATATGACAAGTCATCAAAAATGGACTTTGGAGTCAAACAGACTTGAATTTCAATCCTGTTCAGTTGCTTGCTAACTCTGTGACATTGCAGAGTTTATTTTATCTCTTACACCTCAGTTTCCTTTTCAATAATGCATTAAAAATGCTAAAAGGTCTTTCATTATGAGTAGTCAGTAAATGCTAGCCATTGTATCCATTGCTTTGGGATTATTTCTCTGAATAGTTTCAAACACCTTAAAGCCCTTCCCCTTCCTTTCATGTGATACATTGTTCCTCATGGGTCTTGTTGACTTTCTTTTCATAATGTTGGCTTTCTTTTTCCCAG
Seq C2 exon
GCTTGATCATGTCCAATGGCCACATATGGAAAGAGCAAAGAAGGTTCTCCCTGACAGCTCTGAGGAACTTTGGTTTAGGAAGGAAGAGCTTAGAGGAACGCATACAGGAAGAAGTTGCCTACCTCATCCAGGCAATAGGAGAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085:ENSBTAT00000056737:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(14.2=98.1)
A:
NA
C2:
PF0006717=p450=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]