GgaINT0039177 @ galGal3
Intron Retention
Gene
ENSGALG00000011413 | E1BVV4_CHICK
Description
NA
Coordinates
chr8:27492011-27492696:-
Coord C1 exon
chr8:27492534-27492696
Coord A exon
chr8:27492016-27492533
Coord C2 exon
chr8:27492011-27492015
Length
518 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TAGCTTCTCAATGTCTGTAGTTC
3' ss Score
3.39
Exon sequences
Seq C1 exon
CTTACTGCGAGGTATGGAAACATCTTCAGCGTGCAGTTTGGAGGTCTGACTTTTGTGGTGGTCAGTGGGTACCAGATGGTGAGAGAAGCCCTTGTCCACCAGGCTGAAATATTTGCAGATCGACCACATATTCCACTTCTCCAAGAAATTTTTAGAGGCTTTG
Seq A exon
GTAAGTATAGCTTCCAAGATTCTGGCAGAAATTTTTCATCTATTTGCAATGATAACAATTAGAGTGAAGGAGGCTGAATTCAGCCCTCAGTAACTGTGCCAATAAAAGCTTGTGTGTAGAGGAAGACAAGAACTGAACTCAGCCTAATAATCTCACAGGTATATATTTGAATCTGTCTGGGATTTAGGTATAAAACGGGGATCCACGTGATGTGTTGAGTTGGGTGAAAGACAAGAAACAAATGCAGGCTGCCCAGTGCCCCTTGAAGAGTGTTCCCTTTGGATTTATCTCCCCTTTTCTTTCTCTCCCTGGCTACACGTGTCTCCAGAGACGGGTTCTGCTGCTCCTGCTGCAGATCTGCCAGCAGCGTGATCGTACTCAGAGTATTTTGGCTTACACCTTTTTTTTCCCACGCAAAGTAACAAAGTAGAAAATCCATAAAGCTAGATATTTAGCATAAGCCAATTACCCTTGAATTTTAATTCCCAGGCAAAGCTATAGCTTCTCAATGTCTGTAG
Seq C2 exon
TTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413:ENSGALT00000018621:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
NA
C2:
PF0006717=p450=FE(0.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]