RnoINT0044402 @ rn6
Intron Retention
Gene
ENSRNOG00000031004 | Cyp2j4
Description
cytochrome P450, family 2, subfamily j, polypeptide 4 [Source:RGD Symbol;Acc:620007]
Coordinates
chr5:119562136-119564846:-
Coord C1 exon
chr5:119564681-119564846
Coord A exon
chr5:119562286-119564680
Coord C2 exon
chr5:119562136-119562285
Length
2395 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GCTGAATCTCTTCATTTGAGGAT
3' ss Score
4.04
Exon sequences
Seq C1 exon
CAGTTTGTGAAGAAATATGGGAATATTTTTAGCCTGAATCTTGGTGACATAACATCCGTGGTCATAACTGGACTGCCCTTAATCAAAGAAACCTTTACTCACATAGAACAAAACATTTTGAATCGCCCTCTCAGTGTTATGCAAGAACGCATCACCAATAAAAATG
Seq A exon
GTAAGTTTATATAAGTTTATTGAGAAACGTGAAGTGTGTGTTACAATGCTTATAGTGCATTATAGGTTCTTTTCCAACAATCCCATAAACCAACTCCATTGGAATTGCCATCTTTATAGGAAGTGTGAGGTTGCATTTCTTTAATGAAAGCATCCATTGAAAAACTTAACAGTGTCATCCCTGTATACATTGACAGAAAACCTATGTCTTGCAAAAACTAACTCTAAAAGTGTTGGTAAGAAGTAACCACACATCCTGTCACAGACAGACGCATTGCTCTCTTATTTCCCCTACTCCACGCCAACCCTCTGGCCTAGAAAAATGAATGTGAGTCACCTTCTTCCTGCTGCTGTTCATCTTGTTGAAAGTTTCTTACACTTTATTATTAAAGTCTTACCATACAGGGACCTGTAGCCTTCCAGAGAGTGTTAGATTAAAATAGTATAAGTACGCAGTATTATTATTAAATCAAGTTACGTGTTCCAAAACTGGAAGCAGAACTTCAAGGGTATTAACCTACCAAAGTTGTAAACATTTCATAATTATTCCCTGAGACAATCAACCATTAACAGTGTATCATTGACTATGCTCTCTGCTATGAGAGTACATTGCTGGTCATAATATAATAGATGAAAATATGCACCTTTATGTAACATGCGCTCCATAAAATGAAAAACCCTGGTGAGATTAGCTAATTAAAACATGTATGTCTACAATGTTAAGGGGAGCTGTTATTCATTAGTAGTTTCTAAGATCTACTGGGATTCCAGTAAAACTTCTATAAGTAAAGAAACTCATTTAGTAACATGGGAAAACAGTTAACAAAGACAGAATATCCCTGAAACAACAAGGACTCGGGCCTTGACAAACTGGGAAGATGTCCAGTGTGGCTAACATAGTATCTAAATGACATAATTAAGTGGACACAAACTCATAAATATGACCAGGAAGAGTTACAAGAGTGGTGTTGAGTAGAGAAGATCACACACTGCACACTCTAAGGCTCATTTAGGTTTTCAGTTAGAAAAGGGAAGGTGTCATGAAATTATCACAGTGGTTAGAAAAGATAGGATTTGAAAAATAAGTTGGGAAGTGAAAGTTGATTATTCCCTGACAATGGCATCACAGACACATGAACCAAAATCATTCAAGAGAGAAACTACATGACCTGATGATGTAGATAGATGGCAGATGGCAAGAGACCAAGGATCTCAGGGGAACTGCCAGAGAGTGGCTCCTGTGGGGATGGCGAATGCAAAGAGGAACAGTGAGAGATGCTAAGGTAGTTGGTAGTGCTGGCTTCTGTTGGGAGTCTCAGAGATACATAACTTTCTGTCACAGTTGTGATGAGTCTAAATGCTTGTAACTGCCAGAGTCAAGTAGTCATGTGCAAGGTTCTGGAATGTACACCTTATATGATTGTCAACAGAACATTTAAATGGTAGGGATGATGAGATTTTCTAAAATAAGAACATGCAGCAAAGAGCGATGTGGGCCTATTCTTGAACAACTCCAATATTTCAAGAGTTGGTAAAAGAAAAAACAGTAAAATTTGTGGGAAATTTGCAGCAAAAAATGAGGAAGAAAATCTGATGCTGCTGAATGCCAGGGGCCACTGGGAAAGGTTTTTGGGAAGCAAGTCTCTGAGTTGCTGAAGGAGCATTTGTGCATGCTGAAAGGGACCACTTCTTAATGTGTAGGGAAAAAGAGACCAAGGCTTATGTTTAAAATGTTCATAATTTTTCTGAAAGTTACAAATAGACTTGAGCATGGCATTGTATGTTCCAGGAAATAGGTAATGATGCTGAGAATACTAGAATGCTTGCCTTCTGGTTTTTTCTAGGCGGACTACACGTGCTTCCTACCTTTTTGCGTCATTTTGAGTCATTGTCTATTAAGCCTCTTTTTCTTTTTAAAAAACCAGGACTCCTTGTAGTGCTTTTCTTATCTCTTTACTTTACGTGTCTTATCCTTTATTTCACTCCTGTTATTCAAGGGTAACAGAACTTTGTAGACGTTCCGTCTACCCTGGAACTAGGAGAGATGAATTTGAACACCAGGTTGGAAAACAGCTGTTTTTTTCCCTTGAAAATTTTCAATGTATTCCTCATTTTCTTTTGCAGCAATTAGAATGGACCTGCTGCTAGGTAGTAATAAACATGCAGAGTTTCCAAGAGAAATAGATTACACAGTAGAAACATCAGTGTGTGATGTTGTAGAGTTCCAGGACATGTTCGCCATCATAATTCTTGCTTTCTAACATTCTGTCTAGACAGCTATCATGGCCCTCATTGGCCCTCCTCCTTTTCACTGCAAGTGTGTTCAACAAATAATTCACGAGGTGCTTTTAGACCATAATTATATAATGTCATAATGCTGAATCTCTTCATTTGAG
Seq C2 exon
GATTGATCTTCTCCAGTGGTCAGACATGGAAGGAGCAAAGAAGGTTTGCCCTGATGACACTCAGGAATTTTGGCTTGGGAAAGAAGAGCTTAGAGCAGCGCATGCAGGAGGAGGCCCACTACCTCGTGGAAGCCATAAGAGAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031004:ENSRNOT00000012977:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(12.9=98.2)
A:
NA
C2:
PF0006717=p450=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]