GgaINT0039369 @ galGal3
Intron Retention
Gene
ENSGALG00000010911 | F1NT95_CHICK
Description
NA
Coordinates
chr8:27482089-27482608:-
Coord C1 exon
chr8:27482446-27482608
Coord A exon
chr8:27482239-27482445
Coord C2 exon
chr8:27482089-27482238
Length
207 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTGTGGAATGCTTCTGCCAGGGC
3' ss Score
4.08
Exon sequences
Seq C1 exon
TTTATTGAAAAACATGGAGACATCTTCAGAACGCAAGTGGGCAGCATGTCATTTGTGATCGTAAATGGGCTGCCACTGATCAAAGAAGCCCTTGTGACCCAGGGAGAGAACTTCATGGATCGCCCGGAATTTCCTACAAATACAGAATTCTTCAACAAATTTG
Seq A exon
GTGAGTAATCAGTAGTGACACGGATCTGAAACACAAAGTCAAAGTGTTGACCAGTTAAATGTGCCAGAAGGCAGTGCCATGGCTTTGTAATCTCACTGAGCAGAGTCACCAGTGTGGCTGAGCCTCCTCTATCAAGGCAGATACCCTCCTGCTTCTTCCTCTTACTGAGGACATCTGCCTTTTCTCACTGTGGAATGCTTCTGCCAG
Seq C2 exon
GGCTGGTCTCCTCCAATGGGCACCTGTGGAAGCAGCAGAGAAGGTTCACCTTGACCACCCTTCGAAACTTTGGCCTGGGGAAGAGGAGCCTGGAGGAGCGGATACAGGAGGAGTGCCGATTCCTCACGGATGCATTCAGGGATGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010911:ENSGALT00000017750:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACATCTTCAGAACGCA
R:
GCTCATCCCTGAATGCATCCG
Band lengths:
296-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]