GgaEX0016338 @ galGal3
Exon Skipping
Gene
ENSGALG00000010911 | F1NT95_CHICK
Description
NA
Coordinates
chr8:27482089-27483319:-
Coord C1 exon
chr8:27483118-27483319
Coord A exon
chr8:27482446-27482608
Coord C2 exon
chr8:27482089-27482238
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTATTTACCTCATCCCCAGTTT
3' ss Score
6.94
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CTGCACCCGCACCATGCTGCGCTTCCTCTGGGACAGCATCTCCCTGCAGATGCTCTTCATCTTCCTCCTTGTCTTCCTGCTCGTCTCTGACTACATGAAGAGGAGAAAGCCGAAGGACTTCCCCCCCGGTCCTTTTTCCTTCCCTTTCCTGGGAAATGTGCAGTTTATGTTTGCGAAAGACCCCGTGGTTGCAATACAGAAG
Seq A exon
TTTATTGAAAAACATGGAGACATCTTCAGAACGCAAGTGGGCAGCATGTCATTTGTGATCGTAAATGGGCTGCCACTGATCAAAGAAGCCCTTGTGACCCAGGGAGAGAACTTCATGGATCGCCCGGAATTTCCTACAAATACAGAATTCTTCAACAAATTTG
Seq C2 exon
GGCTGGTCTCCTCCAATGGGCACCTGTGGAAGCAGCAGAGAAGGTTCACCTTGACCACCCTTCGAAACTTTGGCCTGGGGAAGAGGAGCCTGGAGGAGCGGATACAGGAGGAGTGCCGATTCCTCACGGATGCATTCAGGGATGAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010911-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
67%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.8=44.8)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGTCTTCCTGCTCGTCT
R:
ATCGGCACTCCTCCTGTATCC
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]