BtaEX0001186 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86420515-86508071:+
Coord C1 exon
chr3:86420515-86420702
Coord A exon
chr3:86468355-86468517
Coord C2 exon
chr3:86507884-86508071
Length
163 bp
Sequences
Splice sites
3' ss Seq
ATCATTCCACTGTTTTTCAGATT
3' ss Score
9.39
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AGAAAGTCCAAGCTGAAATCGATAAGGTGCTTGGTGAGTCACAACAACCAAGCACGGCCGCTCGCGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCCTCCCTCTGAACGTGCCCCGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGCCCAAG
Seq A exon
ATTGTGAAGAAATATGGGAACATGATTAGCCTGGAAATGGGTGGATTTTCTACAGTTTTTTTTAAGTGGATTGCCCAAAATCAAAGAAGCCCTTGTCTACCAGGACCAAAACTTGTGAACCACCCCATACAGCGTATCCAAGAGAATATCTTTAAGAAACATG
Seq C2 exon
AAAAAGTCCAAGCTGAGATCGACAGGGTGCTCGGGCAATCACAGAAGGTGAGCACGGCCTCTCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCGTCCCCATGAACGTGCCCAGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085_MULTIEX1-9/18=7-17
Average complexity
C3
Mappability confidence:
86%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(17.5=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTTGGTGAGTCACAACA
R:
GATGACAGCGTTGGTGTAGGG
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development