MmuEX0013352 @ mm9
Exon Skipping
Gene
ENSMUSG00000052914 | Cyp2j6
Description
cytochrome P450, family 2, subfamily j, polypeptide 6 [Source:MGI Symbol;Acc:MGI:1270148]
Coordinates
chr4:96202687-96220352:-
Coord C1 exon
chr4:96219933-96220352
Coord A exon
chr4:96212390-96212552
Coord C2 exon
chr4:96202687-96202836
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACTATTGATGTATTTTTCAGTTG
3' ss Score
7.11
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AGCAGATTGGAAACTACTCTCAGAAGCTTTGTCACTTCCTGCGAGAGCCCAGCTCCAGGGAGGAAACCAGAGGAGCAAAGGGGAGTGGACAGAAAGGGATAGGGAGGGACTGAGGGGACCGGTTTTAGAAGGGTGCCCTTGTTGTTAGCACCTGGGACTTGCCGCAGCTCAGACCTTCATTCCTCAGACGAACCAGCTGCAGTCCTAGCCATGCTCGCTGCTACCGGCTCCTTGTTAGCCACGATCTGGGCAGCGCTCCATCCCAGGACTCTGTTGGTGGCTGCAGTCACCTTCCTGCTTCTGGCTGATTACTTCAAAAACCGGCGCCCCAAGAACTATCCCCCAGGGCCTTGGGGTCTGCCTTTCGTGGGCAACATATTCCAGTTGGACTTTGGGCAGCCCCACCTCTCAATCCAGCCG
Seq A exon
TTGGTGAAGAAATATGGGAATATTTTTAGCCTGAATCTTGGTGACATAACTTCAGTGGTCATAACTGGACTGCCCTTAATCAAAGAAGCACTTACTCAAATGGAACAAAACATTATGAATCGTCCTCTAAGTGTTATGCAAGAACGTATATCTAATAAAAATG
Seq C2 exon
GATTGATCTTCTCCAGTGGCCAAATATGGAAGGAGCAAAGAAGGTTTGCCCTGATGACACTGAGGAACTTTGGACTGGGAAAGAAGAGCTTAGAGGAGCGCATGCAGGAGGAGGCCTCCCACCTAGTGGAAGCCATAAGAGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052914-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(13.3=37.1)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTTAGCCACGATCTGGG
R:
TCCTCAGTGTCATCAGGGCAA
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: