BtaEX0001182 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N3N3]
Coordinates
chr3:86504644-86508071:+
Coord C1 exon
chr3:86504644-86504820
Coord A exon
chr3:86507391-86507532
Coord C2 exon
chr3:86507884-86508071
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATAATCACTATGCTTTCTAGCAC
3' ss Score
4.38
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTACAATGCTTTTCCAAGAATAATGAATTTCCTTCCGGGATCCCACCACACTCTCTTTCGTAAATGGGAGAAACTGAAAATGTTTGTTGCTAATGTGATTGAAAACCACAGGAAAGATTGGAATCCTGCTGAAGCAAGAGACTTCATTGATGCTTACCTCCAGGAGATAGAGAAG
Seq A exon
CACAAAGGCAATGCTACTTCGAGTTTCGATGACGAAAACCTCATCTGCAGCACCCTGGACCTCTTCTTGGCTGGAACAGAGACAACTTCAACCACCCTGCGCTGGGGATTGCTTTTCATGGCCCTGAACCCCGAAATCCAAG
Seq C2 exon
AAAAAGTCCAAGCTGAGATCGACAGGGTGCTCGGGCAATCACAGAAGGTGAGCACGGCCTCTCGAGAGTCCATGCCCTACACCAACGCTGTCATCCACGAGGTGCAGAGAATGGGGAACATCGTCCCCATGAACGTGCCCAGGGAGGTGACAGTGGACACCGTCCTGGCTGGATACCACCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038085_MULTIEX1-16/18=15-17
Average complexity
C1
Mappability confidence:
83%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
ENSBTAT00000013230fB7
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACCACACTCTCTTTCGT
R:
TTCTCTGCACCTCGTGGATGA
Band lengths:
246-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development